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Towards a quantitative understanding of the within-host dynamics of influenza A infections.

Handel A, Longini IM Jr, Antia R.

J R Soc Interface. 2009 May 27. [Epub ahead of print]PMID: 19474085 [PubMed - as supplied by publisher]Related articles

Quantifying the development of the peripheral naive CD4+ T-cell pool in humans.

Bains I, Antia R, Callard R, Yates AJ.

Blood. 2009 May 28;113(22):5480-7. Epub 2009 Jan 28.PMID: 19179300 [PubMed - indexed for MEDLINE]Related articles

Memory CD8 T-cell compartment grows in size with immunological experience.

Vezys V, Yates A, Casey KA, Lanier G, Ahmed R, Antia R, Masopust D.

Nature. 2009 Jan 8;457(7226):196-9. Epub 2008 Nov 12.PMID: 19005468 [PubMed - indexed for MEDLINE]Related articles

Antiviral resistance and the control of pandemic influenza: the roles of stochasticity, evolution and model details.

Handel A, Longini IM Jr, Antia R.

J Theor Biol. 2009 Jan 7;256(1):117-25. Epub 2008 Oct 8.PMID: 18952105 [PubMed - indexed for MEDLINE]Related articles

Sharing the burden: antigen transport and firebreaks in immune responses.

Handel A, Yates A, Pilyugin SS, Antia R.

J R Soc Interface. 2009 May 6;6(34):447-54. Epub 2008 Aug 15.PMID: 18708323 [PubMed - indexed for MEDLINE]Related articles

A simple mathematical model helps to explain the immunodominance of CD8 T cells in influenza A virus infections.

Handel A, Antia R.

J Virol. 2008 Aug;82(16):7768-72. Epub 2008 Jun 11.PMID: 18550672 [PubMed - indexed for MEDLINE]Related articlesFree article

Oviductal volvulus in a Nera black chicken (Gallus gallus domesticus) in Nigeria.

Ajayi OL, Antia RE, Omotainse SO.

Avian Pathol. 2008 Apr;37(2):139-40.PMID: 18393090 [PubMed - indexed for MEDLINE]Related articles

The dynamics of acute malaria infections. I. Effect of the parasite's red blood cell preference.

Antia R, Yates A, de Roode JC.

Proc Biol Sci. 2008 Jun 22;275(1641):1449-58.PMID: 18364317 [PubMed - indexed for MEDLINE]Related articlesFree article

Revisiting estimates of CTL killing rates in vivo.

Yates A, Graw F, Barber DL, Ahmed R, Regoes RR, Antia R.

PLoS One. 2007 Dec 12;2(12):e1301.PMID: 18074025 [PubMed - indexed for MEDLINE]Related articlesFree article

Neuraminidase inhibitor resistance in influenza: assessing the danger of its generation and spread.

Handel A, Longini IM Jr, Antia R.

PLoS Comput Biol. 2007 Dec;3(12):e240.PMID: 18069885 [PubMed - indexed for MEDLINE]Related articlesFree article

Gap junction-mediated antigen transport in immune responses.

Handel A, Yates A, Pilyugin SS, Antia R.

Trends Immunol. 2007 Nov;28(11):463-6. Epub 2007 Oct 24.PMID: 17951108 [PubMed - indexed for MEDLINE]Related articles

Understanding the slow depletion of memory CD4+ T cells in HIV infection.

Yates A, Stark J, Klein N, Antia R, Callard R.

PLoS Med. 2007 May;4(5):e177. Erratum in: PLoS Med. 2008 Jan;5(1):e11. PMID: 17518516 [PubMed - indexed for MEDLINE]Related articlesFree article

Mathematical models of cytotoxic T-lymphocyte killing.

Regoes RR, Yates A, Antia R.

Immunol Cell Biol. 2007 Jun;85(4):274-9. Epub 2007 Apr 10. Review.PMID: 17420769 [PubMed - indexed for MEDLINE]Related articles

What is the best control strategy for multiple infectious disease outbreaks?

Handel A, Longini IM Jr, Antia R.

Proc Biol Sci. 2007 Mar 22;274(1611):833-7.PMID: 17251095 [PubMed - indexed for MEDLINE]Related articlesFree article

Estimation of the rate of killing by cytotoxic T lymphocytes in vivo.

Regoes RR, Barber DL, Ahmed R, Antia R.

Proc Natl Acad Sci U S A. 2007 Jan 30;104(5):1599-603. Epub 2007 Jan 22.PMID: 17242364 [PubMed - indexed for MEDLINE]Related articlesFree article

Pathology during acute infections: contributions of intracellular pathogens and the CTL response.

Ganusov VV, Antia R.

Biol Lett. 2005 Jun 22;1(2):239-42.PMID: 17148176 [PubMed - indexed for MEDLINE]Related articlesFree article

The role of compensatory mutations in the emergence of drug resistance.

Handel A, Regoes RR, Antia R.

PLoS Comput Biol. 2006 Oct;2(10):e137.PMID: 17040124 [PubMed - indexed for MEDLINE]Related articlesFree article

How do pathogen evolution and host heterogeneity interact in disease emergence?

Yates A, Antia R, Regoes RR.

Proc Biol Sci. 2006 Dec 22;273(1605):3075-83.PMID: 17015347 [PubMed - indexed for MEDLINE]Related articlesFree article

Imperfect vaccines and the evolution of pathogens causing acute infections in vertebrates.

Ganusov VV, Antia R.

Evolution. 2006 May;60(5):957-69.PMID: 16817536 [PubMed - indexed for MEDLINE]Related articles

How does cross-reactive stimulation affect the longevity of CD8+ T cell memory?

Ganusov VV, Pilyugin SS, Ahmed R, Antia R.

PLoS Comput Biol. 2006 Jun 9;2(6):e55. Epub 2006 Jun 9. Erratum in: PLoS Comput Biol. 2006 Jul 21:2(7):e97. PMID: 16789812 [PubMed - indexed for MEDLINE]Related articlesFree article

How do adaptive immune systems control pathogens while avoiding autoimmunity?

Bergstrom CT, Antia R.

Trends Ecol Evol. 2006 Jan;21(1):22-8. Epub 2005 Nov 22. Review.PMID: 16701466 [PubMed - indexed for MEDLINE]Related articles

Emerging pathogens: the epidemiology and evolution of species jumps.

Woolhouse ME, Haydon DT, Antia R.

Trends Ecol Evol. 2005 May;20(5):238-44.PMID: 16701375 [PubMed]Related articles

On RNA interference as template immunity.

Bergstrom CT, Antia R.

J Biosci. 2005 Jun;30(3):295-7. No abstract available. PMID: 16052066 [PubMed - indexed for MEDLINE]Related articlesFree article

Quantifying cell turnover using CFSE data.

Ganusov VV, Pilyugin SS, de Boer RJ, Murali-Krishna K, Ahmed R, Antia R.

J Immunol Methods. 2005 Mar;298(1-2):183-200. Erratum in: J Immunol Methods. 2006 Dec 20;317(1-2):186-7. PMID: 15847808 [PubMed - indexed for MEDLINE]Related articles

Optimal replication of poliovirus within cells.

Regoes RR, Crotty S, Antia R, Tanaka MM.

Am Nat. 2005 Mar;165(3):364-73. Epub 2005 Feb 3.PMID: 15729666 [PubMed - indexed for MEDLINE]Related articles

The role of models in understanding CD8+ T-cell memory.

Antia R, Ganusov VV, Ahmed R.

Nat Rev Immunol. 2005 Feb;5(2):101-11. Review.PMID: 15662368 [PubMed - indexed for MEDLINE]Related articles

Theoretical immunology: parasitic turncoat.

Antia R, Koella J.

Nature. 2004 Jun 3;429(6991):511-3. No abstract available. PMID: 15175734 [PubMed - indexed for MEDLINE]Related articles

Roles of target cells and virus-specific cellular immunity in primary simian immunodeficiency virus infection.

Regoes RR, Antia R, Garber DA, Silvestri G, Feinberg MB, Staprans SI.

J Virol. 2004 May;78(9):4866-75.PMID: 15078967 [PubMed - indexed for MEDLINE]Related articlesFree article

The role of evolution in the emergence of infectious diseases.

Antia R, Regoes RR, Koella JC, Bergstrom CT.

Nature. 2003 Dec 11;426(6967):658-61.PMID: 14668863 [PubMed - indexed for MEDLINE]Related articles

The rescaling method for quantifying the turnover of cell populations.

Pilyugin SS, Ganusov VV, Murali-Krishna K, Ahmed R, Antia R.

J Theor Biol. 2003 Nov 21;225(2):275-83.PMID: 14575660 [PubMed - indexed for MEDLINE]Related articles

Mathematical models of RNA silencing: unidirectional amplification limits accidental self-directed reactions.

Bergstrom CT, McKittrick E, Antia R.

Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11511-6. Epub 2003 Sep 12.PMID: 12972639 [PubMed - indexed for MEDLINE]Related articlesFree article

Trade-offs and the evolution of virulence of microparasites: do details matter?

Ganusov VV, Antia R.

Theor Popul Biol. 2003 Sep;64(2):211-20.PMID: 12948682 [PubMed - indexed for MEDLINE]Related articles

Models of CD8+ responses: 1. What is the antigen-independent proliferation program.

Antia R, Bergstrom CT, Pilyugin SS, Kaech SM, Ahmed R.

J Theor Biol. 2003 Apr 21;221(4):585-98.PMID: 12713942 [PubMed - indexed for MEDLINE]Related articles

Epidemiological models for the spread of anti-malarial resistance.

Koella JC, Antia R.

Malar J. 2003 Feb 19;2:3. Epub 2003 Feb 19.PMID: 12643812 [PubMed - indexed for MEDLINE]Related articlesFree article

Lineage relationship and protective immunity of memory CD8 T cell subsets.

Wherry EJ, Teichgräber V, Becker TC, Masopust D, Kaech SM, Antia R, von Andrian UH, Ahmed R.

Nat Immunol. 2003 Mar;4(3):225-34. Epub 2003 Feb 3.PMID: 12563257 [PubMed - indexed for MEDLINE]Related articles

Effect of human leukocyte antigen heterozygosity on infectious disease outcome: the need for allele-specific measures.

Lipsitch M, Bergstrom CT, Antia R.

BMC Med Genet. 2003 Jan 24;4:2. Epub 2003 Jan 24.PMID: 12542841 [PubMed - indexed for MEDLINE]Related articlesFree article

Interleukin 15 is required for proliferative renewal of virus-specific memory CD8 T cells.

Becker TC, Wherry EJ, Boone D, Murali-Krishna K, Antia R, Ma A, Ahmed R.

J Exp Med. 2002 Jun 17;195(12):1541-8.PMID: 12070282 [PubMed - indexed for MEDLINE]Related articlesFree article

Within-host population dynamics and the evolution of microparasites in a heterogeneous host population.

Ganusov VV, Bergstrom CT, Antia R.

Evolution. 2002 Feb;56(2):213-23.PMID: 11926490 [PubMed - indexed for MEDLINE]Related articles

Estimating the precursor frequency of naive antigen-specific CD8 T cells.

Blattman JN, Antia R, Sourdive DJ, Wang X, Kaech SM, Murali-Krishna K, Altman JD, Ahmed R.

J Exp Med. 2002 Mar 4;195(5):657-64.PMID: 11877489 [PubMed - indexed for MEDLINE]Related articlesFree article

Recruitment times, proliferation, and apoptosis rates during the CD8(+) T-cell response to lymphocytic choriomeningitis virus.

De Boer RJ, Oprea M, Antia R, Murali-Krishna K, Ahmed R, Perelson AS.

J Virol. 2001 Nov;75(22):10663-9.PMID: 11602708 [PubMed - indexed for MEDLINE]Related articlesFree article

Why we don't get sick: the within-host population dynamics of bacterial infections.

Levin BR, Antia R.

Science. 2001 May 11;292(5519):1112-5.PMID: 11352067 [PubMed - indexed for MEDLINE]Related articles

Modeling immune responses with handling time.

Pilyugin SS, Antia R.

Bull Math Biol. 2000 Sep;62(5):869-90.PMID: 11016088 [PubMed - indexed for MEDLINE]Related articles

Effects of antiviral usage on transmission dynamics of herpes simplex virus type 1 and on antiviral resistance: predictions of mathematical models.

Lipsitch M, Bacon TH, Leary JJ, Antia R, Levin BR.

Antimicrob Agents Chemother. 2000 Oct;44(10):2824-35.PMID: 10991866 [PubMed - indexed for MEDLINE]Related articlesFree article

Models of immune memory: on the role of cross-reactive stimulation, competition, and homeostasis in maintaining immune memory.

Antia R, Pilyugin SS, Ahmed R.

Proc Natl Acad Sci U S A. 1998 Dec 8;95(25):14926-31.PMID: 9843992 [PubMed - indexed for MEDLINE]Related articlesFree article

The population genetics of antibiotic resistance. II: Analytic theory for sustained populations of bacteria in a community of hosts.

Stewart FM, Antia R, Levin BR, Lipsitch M, Mittler JE.

Theor Popul Biol. 1998 Apr;53(2):152-65.PMID: 9615474 [PubMed - indexed for MEDLINE]Related articles

Humoral immunity due to long-lived plasma cells.

Slifka MK, Antia R, Whitmire JK, Ahmed R.

Immunity. 1998 Mar;8(3):363-72.PMID: 9529153 [PubMed - indexed for MEDLINE]Related articles

Resistance to antimicrobial chemotherapy: a prescription for research and action.

Levin BR, Antia R, Berliner E, Bloland P, Bonhoeffer S, Cohen M, DeRouin T, Fields PI, Jafari H, Jernigan D, Lipsitch M, McGowan JE Jr, Mead P, Nowak M, Porco T, Sykora P, Simonsen L, Spitznagel J, Tauxe R, Tenover F.

Am J Med Sci. 1998 Feb;315(2):87-94.PMID: 9472907 [PubMed - indexed for MEDLINE]Related articles

Modeling T-cell proliferation: an investigation of the consequences of the Hayflick limit.

Pilyugin S, Mittler J, Antia R.

J Theor Biol. 1997 May 7;186(1):117-29.PMID: 9176641 [PubMed - indexed for MEDLINE]Related articles

Trace element levels in plasma/serum and erythrocytes of Keteku and white Fulani cattle.

Awolaja OA, Antia RE, Oyejide A.

Trop Anim Health Prod. 1997 Feb;29(1):2-6.PMID: 9090008 [PubMed - indexed for MEDLINE]Related articles

Mathematical models of parasite responses to host immune defences.

Antia R, Lipsitch M.

Parasitology. 1997;115 Suppl:S155-67. Review.PMID: 9571700 [PubMed - indexed for MEDLINE]Related articles