OR2G6 - SNP

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Select item 14169861.

rs1416986 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:248507877 (GRCh38)
1:248671178 (GRCh37)
Canonical SPDI:: NC_000001.11:248507876:T:C
Gene:: OR2G6 (Varview), LOC105373277 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by cluster
HGVS:: NC_000001.11:g.248507877T>C, NC_000001.10:g.248671178T>C, NW_025791755.1:g.182140G>A, NT_187518.1:g.161917T>C, NT_187646.1:g.158295T>C

Select item 14169872.

rs1416987 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:248507712 (GRCh38)
1:248671013 (GRCh37)
Canonical SPDI:: NC_000001.11:248507711:T:C
Gene:: OR2G6 (Varview), LOC105373277 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by cluster
HGVS:: NC_000001.11:g.248507712T>C, NC_000001.10:g.248671013T>C, NW_025791755.1:g.182305G>A, NT_187518.1:g.161752T>C, NT_187646.1:g.158130T>C

Select item 20398233.

rs2039823 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 1:248506927 (GRCh38)
1:248670228 (GRCh37)
Canonical SPDI:: NC_000001.11:248506926:C:A,NC_000001.11:248506926:C:G
Gene:: OR2G6 (Varview), LOC105373277 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0./0 (SGDP_PRJ)
G=0.01194/156 (TOMMO)
G=0.02778/1 (GENOME_DK)
G=0.04291/89 (KOREAN)
HGVS:: NC_000001.11:g.248506927C>A, NC_000001.11:g.248506927C>G, NC_000001.10:g.248670228C>A, NC_000001.10:g.248670228C>G, NW_025791755.1:g.183086C>G, NW_025791755.1:g.183086C>T, NT_187518.1:g.160967C>A, NT_187518.1:g.160967C>G, NT_187646.1:g.157345C>A, NT_187646.1:g.157345C>G

Select item 40747544.

rs4074754 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:248523358 (GRCh38)
1:248686659 (GRCh37)
Canonical SPDI:: NC_000001.11:248523357:A:G
Gene:: OR2G6 (Varview), LOC105373277 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.151589/4675 (ALFA)
G=0.106481/23 (Vietnamese)
G=0.111111/24 (Qatari)
G=0.126622/488 (ALSPAC)
G=0.131667/79 (NorthernSweden)
G=0.135113/501 (TWINSUK)
G=0.13686/401 (KOREAN)
G=0.139086/2331 (TOMMO)
G=0.14083/258 (Korea1K)
G=0.147295/147 (GoNL)
G=0.15/6 (GENOME_DK)
G=0.177679/796 (Estonian)
G=0.177701/890 (1000Genomes)
G=0.17819/47165 (TOPMED)
G=0.182527/25568 (GnomAD)
A=0.333333/4 (Siberian)
A=0.398438/51 (SGDP_PRJ)
HGVS:: NC_000001.11:g.248523358A>G, NC_000001.10:g.248686659A>G, NW_025791755.1:g.172679T>C, NM_001013355.2:c.*761A>G

Select item 40747555.

rs4074755 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:248523534 (GRCh38)
1:248686835 (GRCh37)
Canonical SPDI:: NC_000001.11:248523533:A:G
Gene:: OR2G6 (Varview), LOC105373277 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.157098/6392 (ALFA)
G=0.12037/26 (Qatari)
G=0.126622/488 (ALSPAC)
G=0.12963/28 (Vietnamese)
G=0.131667/79 (NorthernSweden)
G=0.135383/502 (TWINSUK)
G=0.137637/403 (KOREAN)
G=0.13905/2330 (TOMMO)
G=0.14083/258 (Korea1K)
G=0.146293/146 (GoNL)
G=0.15/6 (GENOME_DK)
G=0.177902/797 (Estonian)
G=0.193891/51321 (TOPMED)
G=0.19722/988 (1000Genomes)
G=0.197375/27657 (GnomAD)
G=0.214059/405 (HapMap)
A=0.333333/4 (Siberian)
A=0.373134/50 (SGDP_PRJ)
HGVS:: NC_000001.11:g.248523534A>G, NC_000001.10:g.248686835A>G, NW_025791755.1:g.172503T>C, NM_001013355.2:c.*937A>G

Select item 42944476.

rs4294447 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:248506999 (GRCh38)
1:248670300 (GRCh37)
Canonical SPDI:: NC_000001.11:248506998:A:G
Gene:: OR2G6 (Varview), LOC105373277 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.05589/663 (ALFA)
A=0./0 (SGDP_PRJ)
G=0.01581/149 (TOMMO)
G=0.04914/74 (KOREAN)
HGVS:: NC_000001.11:g.248506999A>G, NC_000001.10:g.248670300A>G, NW_025791755.1:g.183014C>T, NT_187518.1:g.161039A>G, NT_187646.1:g.157417A>G

Select item 44803927.

rs4480392 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:248506993 (GRCh38)
1:248670294 (GRCh37)
Canonical SPDI:: NC_000001.11:248506992:T:C
Gene:: OR2G6 (Varview), LOC105373277 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.05547/658 (ALFA)
T=0./0 (SGDP_PRJ)
C=0.01562/150 (TOMMO)
C=0.04712/72 (KOREAN)
HGVS:: NC_000001.11:g.248506993T>C, NC_000001.10:g.248670294T>C, NW_025791755.1:g.183020G>A, NT_187518.1:g.161033T>C, NT_187646.1:g.157411T>C

Select item 45580108.

rs4558010 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:248506991 (GRCh38)
1:248670292 (GRCh37)
Canonical SPDI:: NC_000001.11:248506990:C:T
Gene:: OR2G6 (Varview), LOC105373277 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.05556/659 (ALFA)
C=0./0 (SGDP_PRJ)
T=0.01554/150 (TOMMO)
T=0.04591/73 (KOREAN)
HGVS:: NC_000001.11:g.248506991C>T, NC_000001.10:g.248670292C>T, NW_025791755.1:g.183022A>G, NT_187518.1:g.161031C>T, NT_187646.1:g.157409C>T

Select item 46397999.

rs4639799 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 1:248524398 (GRCh38)
1:248687699 (GRCh37)
Canonical SPDI:: NC_000001.11:248524397:G:T
Gene:: OR2G6 (Varview), LOC105373277 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.28968/11812 (ALFA)
G=0.1863/718 (ALSPAC)
G=0.190669/707 (TWINSUK)
G=0.192308/10 (Siberian)
G=0.22/132 (NorthernSweden)
G=0.220441/220 (GoNL)
G=0.242424/16 (PRJEB36033)
G=0.248858/109 (SGDP_PRJ)
G=0.262054/1174 (Estonian)
G=0.272887/310 (Daghestan)
G=0.3/12 (GENOME_DK)
G=0.314815/68 (Qatari)
G=0.376197/52715 (GnomAD)
G=0.387593/102592 (TOPMED)
T=0.398148/86 (Vietnamese)
T=0.450028/7542 (TOMMO)
G=0.465188/1363 (KOREAN)
G=0.485322/2430 (1000Genomes)
T=0.486734/38304 (PAGE_STUDY)
T=0.499454/915 (Korea1K)
HGVS:: NC_000001.11:g.248524398G>T, NC_000001.10:g.248687699G>T, NW_025791755.1:g.171637A>C, NM_001013355.2:c.*1801G>T

Select item 751825210.

rs7518252 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 1:248527086 (GRCh38)
1:248690387 (GRCh37)
Canonical SPDI:: NC_000001.11:248527085:A:G,NC_000001.11:248527085:A:T
Gene:: OR2G6 (Varview), LOC105373277 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.076673/1107 (ALFA)
T=0.125/27 (Qatari)
T=0.137577/402 (KOREAN)
T=0.14083/258 (Korea1K)
T=0.142483/2388 (TOMMO)
T=0.147295/147 (GoNL)
T=0.177902/797 (Estonian)
T=0.217247/57503 (TOPMED)
T=0.219743/30728 (GnomAD)
T=0.221268/1108 (1000Genomes)
A=0.378378/56 (SGDP_PRJ)
HGVS:: NC_000001.11:g.248527086A>G, NC_000001.11:g.248527086A>T, NC_000001.10:g.248690387A>G, NC_000001.10:g.248690387A>T, NW_025791755.1:g.168949T>C, NW_025791755.1:g.168949T>A, NM_001013355.2:c.*4489A>G, NM_001013355.2:c.*4489A>T

Select item 751834111.

rs7518341 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 1:248527145 (GRCh38)
1:248690446 (GRCh37)
Canonical SPDI:: NC_000001.11:248527144:A:C,NC_000001.11:248527144:A:G
Gene:: OR2G6 (Varview), LOC105373277 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000215/3 (ALFA)
C=0.00463/1 (Qatari)
C=0.022197/3111 (GnomAD)
C=0.023423/117 (1000Genomes)
A=0.5/8 (SGDP_PRJ)
HGVS:: NC_000001.11:g.248527145A>C, NC_000001.11:g.248527145A>G, NC_000001.10:g.248690446A>C, NC_000001.10:g.248690446A>G, NW_025791755.1:g.168890T>G, NW_025791755.1:g.168890T>C, NM_001013355.2:c.*4548A>C, NM_001013355.2:c.*4548A>G

Select item 752226812.

rs7522268 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 1:248527137 (GRCh38)
1:248690438 (GRCh37)
Canonical SPDI:: NC_000001.11:248527136:C:A,NC_000001.11:248527136:C:T
Gene:: OR2G6 (Varview), LOC105373277 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.00463/1 (Qatari)
A=0.023423/117 (1000Genomes)
A=0.023469/6212 (TOPMED)
C=0.5/8 (SGDP_PRJ)
HGVS:: NC_000001.11:g.248527137C>A, NC_000001.11:g.248527137C>T, NC_000001.10:g.248690438C>A, NC_000001.10:g.248690438C>T, NW_025791755.1:g.168898G>T, NW_025791755.1:g.168898G>A, NM_001013355.2:c.*4540C>A, NM_001013355.2:c.*4540C>T

Select item 753220313.

rs7532203 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 1:248527467 (GRCh38)
1:248690768 (GRCh37)
Canonical SPDI:: NC_000001.11:248527466:G:A,NC_000001.11:248527466:G:C
Gene:: OR2G6 (Varview), LOC105373277 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000287/4 (ALFA)
A=0.000142/2 (TOMMO)
A=0.000546/1 (Korea1K)
A=0.00463/1 (Qatari)
A=0.023942/3355 (GnomAD)
A=0.025765/129 (1000Genomes)
G=0.5/8 (SGDP_PRJ)
HGVS:: NC_000001.11:g.248527467G>A, NC_000001.11:g.248527467G>C, NC_000001.10:g.248690768G>A, NC_000001.10:g.248690768G>C, NW_025791755.1:g.168568C>T, NW_025791755.1:g.168568C>G

Select item 933030514.

rs9330305 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 1:248522418 (GRCh38)
1:248685719 (GRCh37)
Canonical SPDI:: NC_000001.11:248522417:A:T
Gene:: OR2G6 (Varview), LOC105373277 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.13455/15434 (ALFA)
T=0.09176/49 (MGP)
T=0.101852/22 (Qatari)
T=0.102606/63 (Vietnamese)
T=0.126622/488 (ALSPAC)
T=0.131043/103 (PRJEB37584)
T=0.131667/79 (NorthernSweden)
T=0.134755/33878 (GnomAD_exomes)
T=0.134844/500 (TWINSUK)
T=0.137201/402 (KOREAN)
T=0.137224/16656 (ExAC)
T=0.139581/2339 (TOMMO)
T=0.14083/258 (Korea1K)
T=0.146293/146 (GoNL)
T=0.15/6 (GENOME_DK)
T=0.164474/50 (FINRISK)
T=0.165375/43773 (TOPMED)
T=0.165678/830 (1000Genomes)
T=0.169852/23779 (GnomAD)
T=0.170767/2221 (GoESP)
T=0.177679/796 (Estonian)
T=0.183962/14448 (PAGE_STUDY)
T=0.185535/59 (HapMap)
A=0.333333/4 (Siberian)
A=0.430769/56 (SGDP_PRJ)
HGVS:: NC_000001.11:g.248522418A>T, NC_000001.10:g.248685719A>T, NW_025791755.1:g.173619T>A, NM_001013355.2:c.772A>T, NM_001013355.1:c.772A>T, NP_001013373.1:p.Met258Leu

Select item 933173915.

rs9331739 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:248524431 (GRCh38)
1:248687732 (GRCh37)
Canonical SPDI:: NC_000001.11:248524430:T:C
Gene:: OR2G6 (Varview), LOC105373277 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.166481/5075 (ALFA)
C=0.115741/25 (Vietnamese)
C=0.125/27 (Qatari)
C=0.126362/487 (ALSPAC)
C=0.131667/79 (NorthernSweden)
C=0.134844/500 (TWINSUK)
C=0.137543/403 (KOREAN)
C=0.139121/2332 (TOMMO)
C=0.141376/259 (Korea1K)
C=0.147295/147 (GoNL)
C=0.15/6 (GENOME_DK)
C=0.177902/797 (Estonian)
C=0.217333/57526 (TOPMED)
C=0.219777/30793 (GnomAD)
C=0.2208/1106 (1000Genomes)
T=0.333333/4 (Siberian)
T=0.378378/56 (SGDP_PRJ)
HGVS:: NC_000001.11:g.248524431T>C, NC_000001.10:g.248687732T>C, NW_025791755.1:g.171604A>G, NM_001013355.2:c.*1834T>C

Select item 966016016.

rs9660160 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:248519647 (GRCh38)
1:248682948 (GRCh37)
Canonical SPDI:: NC_000001.11:248519646:T:G
Gene:: OR2G6 (Varview), LOC105373277 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.073213/1383 (ALFA)
G=0.057174/212 (TWINSUK)
G=0.061754/238 (ALSPAC)
G=0.07515/75 (GoNL)
G=0.075486/10577 (GnomAD)
G=0.085647/22670 (TOPMED)
G=0.085938/385 (Estonian)
G=0.088333/53 (NorthernSweden)
G=0.125/5 (GENOME_DK)
G=0.12963/28 (Qatari)
G=0.172861/866 (1000Genomes)
G=0.315017/923 (KOREAN)
G=0.400835/6718 (TOMMO)
T=0.412088/75 (SGDP_PRJ)
G=0.457944/98 (Vietnamese)
T=0.5/6 (Siberian)
HGVS:: NC_000001.11:g.248519647T>G, NC_000001.10:g.248682948T>G, NW_025791755.1:g.176393A>C

Select item 972699717.

rs9726997 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:248520558 (GRCh38)
1:248683859 (GRCh37)
Canonical SPDI:: NC_000001.11:248520557:T:G
Gene:: OR2G6 (Varview), LOC105373277 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000001.11:g.248520558T>G, NC_000001.10:g.248683859T>G, NW_025791755.1:g.175480A>C

Select item 972747418.

rs9727474 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C,G [Show Flanks]
Chromosome:: 1:248521952 (GRCh38)
1:248685253 (GRCh37)
Canonical SPDI:: NC_000001.11:248521951:T:A,NC_000001.11:248521951:T:C,NC_000001.11:248521951:T:G
Gene:: OR2G6 (Varview), LOC105373277 (Varview)
Functional Consequence:: coding_sequence_variant,genic_upstream_transcript_variant,synonymous_variant,intron_variant,stop_gained
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.008057/403 (ALFA)
T=0./0 (ALSPAC)
T=0./0 (FINRISK)
T=0./0 (GENOME_DK)
T=0./0 (KOREAN)
T=0./0 (NorthernSweden)
T=0./0 (Siberian)
T=0./0 (TOMMO)
T=0./0 (TWINSUK)
T=0./0 (Vietnamese)
T=0.000546/1 (Korea1K)
T=0.001002/1 (GoNL)
T=0.011422/2867 (GnomAD_exomes)
T=0.014341/1741 (ExAC)
T=0.014981/8 (MGP)
T=0.016364/9 (SGDP_PRJ)
T=0.041667/9 (Qatari)
T=0.047171/6614 (GnomAD)
T=0.049862/13198 (TOPMED)
T=0.0509/662 (GoESP)
T=0.051686/259 (1000Genomes)
T=0.178481/141 (HapMap)
HGVS:: NC_000001.11:g.248521952T>A, NC_000001.11:g.248521952T>C, NC_000001.11:g.248521952T>G, NC_000001.10:g.248685253T>A, NC_000001.10:g.248685253T>C, NC_000001.10:g.248685253T>G, NW_025791755.1:g.174085G>A, NW_025791755.1:g.174085G>T, NW_025791755.1:g.174085G>C, NM_001013355.2:c.306T>A, NM_001013355.2:c.306T>C, NM_001013355.2:c.306T>G, NM_001013355.1:c.306T>A, NM_001013355.1:c.306T>C, NM_001013355.1:c.306T>G, NP_001013373.1:p.Tyr102Ter, NP_001013373.1:p.Tyr102Ter

Select item 972821219.

rs9728212 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 1:248525815 (GRCh38)
1:248689116 (GRCh37)
Canonical SPDI:: NC_000001.11:248525814:C:A,NC_000001.11:248525814:C:G,NC_000001.11:248525814:C:T
Gene:: OR2G6 (Varview), LOC105373277 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.125/27 (Qatari)
A=0.126362/487 (ALSPAC)
A=0.131667/79 (NorthernSweden)
A=0.134035/497 (TWINSUK)
A=0.137543/403 (KOREAN)
A=0.139015/2330 (TOMMO)
A=0.14083/258 (Korea1K)
A=0.147295/147 (GoNL)
A=0.15/6 (GENOME_DK)
A=0.177679/796 (Estonian)
A=0.208307/1043 (1000Genomes)
A=0.217194/57489 (TOPMED)
C=0.333333/4 (Siberian)
C=0.378378/56 (SGDP_PRJ)
HGVS:: NC_000001.11:g.248525815C>A, NC_000001.11:g.248525815C>G, NC_000001.11:g.248525815C>T, NC_000001.10:g.248689116C>A, NC_000001.10:g.248689116C>G, NC_000001.10:g.248689116C>T, NW_025791755.1:g.170220G>T, NW_025791755.1:g.170220G>C, NW_025791755.1:g.170220G>A, NM_001013355.2:c.*3218C>A, NM_001013355.2:c.*3218C>G, NM_001013355.2:c.*3218C>T

Select item 972828120.

rs9728281 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:248523689 (GRCh38)
1:248686990 (GRCh37)
Canonical SPDI:: NC_000001.11:248523688:T:C
Gene:: OR2G6 (Varview), LOC105373277 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.015308/243 (ALFA)
C=0.000342/1 (KOREAN)
C=0.009259/2 (Qatari)
C=0.016521/2317 (GnomAD)
C=0.01722/4558 (TOPMED)
C=0.021081/106 (1000Genomes)
C=0.049296/56 (HapMap)
T=0.5/7 (SGDP_PRJ)
HGVS:: NC_000001.11:g.248523689T>C, NC_000001.10:g.248686990T>C, NW_025791755.1:g.172346A>G, NM_001013355.2:c.*1092T>C

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