MIR378C - SNP

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Select item 8923251.

rs892325 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G,T [Show Flanks]
Chromosome:: 10:130963379 (GRCh38)
10:132761642 (GRCh37)
Canonical SPDI:: NC_000010.11:130963378:A:C,NC_000010.11:130963378:A:G,NC_000010.11:130963378:A:T
Gene:: MIR378C (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.308914/5621 (ALFA)
T=0./0 (KOREAN)
G=0.259259/56 (Qatari)
G=0.315179/1412 (Estonian)
G=0.316613/1174 (TWINSUK)
G=0.324079/1249 (ALSPAC)
G=0.325/13 (GENOME_DK)
G=0.329013/1648 (1000Genomes)
G=0.331112/87642 (TOPMED)
G=0.333667/333 (GoNL)
G=0.336773/47093 (GnomAD)
G=0.353333/212 (NorthernSweden)
G=0.374903/6283 (TOMMO)
A=0.375/120 (SGDP_PRJ)
G=0.411026/753 (Korea1K)
A=0.5/11 (Siberian)
HGVS:: NC_000010.11:g.130963379A>C, NC_000010.11:g.130963379A>G, NC_000010.11:g.130963379A>T, NC_000010.10:g.132761642A>C, NC_000010.10:g.132761642A>G, NC_000010.10:g.132761642A>T

Select item 23977412.

rs2397741 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 10:130963758 (GRCh38)
10:132762021 (GRCh37)
Canonical SPDI:: NC_000010.11:130963757:A:G,NC_000010.11:130963757:A:T
Gene:: MIR378C (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.312154/8003 (ALFA)
G=0.242812/152 (Chileans)
G=0.259259/56 (Qatari)
G=0.315625/1414 (Estonian)
G=0.316073/1172 (TWINSUK)
G=0.323819/1248 (ALSPAC)
G=0.325/13 (GENOME_DK)
G=0.329013/1648 (1000Genomes)
G=0.330613/87510 (TOPMED)
G=0.332665/332 (GoNL)
G=0.33492/46645 (GnomAD)
G=0.353333/212 (NorthernSweden)
G=0.368644/696 (HapMap)
G=0.372248/6239 (TOMMO)
A=0.378125/121 (SGDP_PRJ)
G=0.412118/755 (Korea1K)
G=0.443345/1299 (KOREAN)
A=0.458333/11 (Siberian)
HGVS:: NC_000010.11:g.130963758A>G, NC_000010.11:g.130963758A>T, NC_000010.10:g.132762021A>G, NC_000010.10:g.132762021A>T

Select item 70964893.

rs7096489 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 10:130962856 (GRCh38)
10:132761119 (GRCh37)
Canonical SPDI:: NC_000010.11:130962855:G:C,NC_000010.11:130962855:G:T
Gene:: MIR378C (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.081335/1323 (ALFA)
C=0.12963/28 (Qatari)
C=0.143474/532 (TWINSUK)
C=0.146341/38735 (TOPMED)
C=0.155/93 (NorthernSweden)
C=0.157758/608 (ALSPAC)
C=0.166333/166 (GoNL)
C=0.175223/785 (Estonian)
C=0.177215/56 (HapMap)
C=0.182854/916 (1000Genomes)
C=0.365741/79 (Vietnamese)
C=0.371892/6228 (TOMMO)
C=0.404476/741 (Korea1K)
C=0.434471/1273 (KOREAN)
G=0.441176/105 (SGDP_PRJ)
G=0.5/7 (Siberian)
HGVS:: NC_000010.11:g.130962856G>C, NC_000010.11:g.130962856G>T, NC_000010.10:g.132761119G>C, NC_000010.10:g.132761119G>T

Select item 79127784.

rs7912778 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:130963442 (GRCh38)
10:132761705 (GRCh37)
Canonical SPDI:: NC_000010.11:130963441:T:C
Gene:: MIR378C (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.008738/126 (ALFA)
C=0.009838/49 (1000Genomes)
C=0.011664/1630 (GnomAD)
C=0.012399/3282 (TOPMED)
T=0.375/3 (SGDP_PRJ)
HGVS:: NC_000010.11:g.130963442T>C, NC_000010.10:g.132761705T>C

Select item 110176165.

rs11017616 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 10:130962690 (GRCh38)
10:132760953 (GRCh37)
Canonical SPDI:: NC_000010.11:130962689:G:A,NC_000010.11:130962689:G:C
Gene:: MIR378C (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.231117/2656 (ALFA)
C=0.314607/168 (MGP)
C=0.328704/71 (Qatari)
C=0.351016/5883 (TOMMO)
G=0.358824/122 (SGDP_PRJ)
C=0.359813/77 (Vietnamese)
C=0.377847/1692 (Estonian)
C=0.384017/1480 (ALSPAC)
C=0.384574/1426 (TWINSUK)
C=0.384864/595 (ExAC)
C=0.386165/1934 (1000Genomes)
C=0.3881/711 (Korea1K)
C=0.399588/105767 (TOPMED)
C=0.4/16 (GENOME_DK)
C=0.402806/402 (GoNL)
C=0.419753/136 (HapMap)
C=0.423208/1240 (KOREAN)
C=0.443333/266 (NorthernSweden)
G=0.461538/12 (Siberian)
HGVS:: NC_000010.11:g.130962690G>A, NC_000010.11:g.130962690G>C, NC_000010.10:g.132760953G>A, NC_000010.10:g.132760953G>C

Select item 110176176.

rs11017617 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:130963819 (GRCh38)
10:132762082 (GRCh37)
Canonical SPDI:: NC_000010.11:130963818:G:A
Gene:: MIR378C (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.003745/54 (ALFA)
A=0./0 (HapMap)
A=0.00463/1 (Qatari)
A=0.004663/654 (GnomAD)
A=0.004968/1315 (TOPMED)
A=0.005153/26 (1000Genomes)
G=0.5/1 (SGDP_PRJ)
HGVS:: NC_000010.11:g.130963819G>A, NC_000010.10:g.132762082G>A

Select item 122514737.

rs12251473 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:130962358 (GRCh38)
10:132760621 (GRCh37)
Canonical SPDI:: NC_000010.11:130962357:A:G
Gene:: MIR378C (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.004854/70 (ALFA)
G=0./0 (HapMap)
G=0./0 (TWINSUK)
G=0.000035/1 (TOMMO)
G=0.000259/1 (ALSPAC)
G=0.005891/826 (GnomAD)
G=0.006317/1672 (TOPMED)
G=0.006871/34 (1000Genomes)
G=0.009259/2 (Qatari)
A=0.5/1 (SGDP_PRJ)
HGVS:: NC_000010.11:g.130962358A>G, NC_000010.10:g.132760621A>G

Select item 122553768.

rs12255376 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 10:130963961 (GRCh38)
10:132762224 (GRCh37)
Canonical SPDI:: NC_000010.11:130963960:A:T
Gene:: MIR378C (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.005825/84 (ALFA)
T=0.003333/1 (HapMap)
T=0.007905/1109 (GnomAD)
T=0.008587/2273 (TOPMED)
T=0.010618/53 (1000Genomes)
A=0.5/4 (SGDP_PRJ)
HGVS:: NC_000010.11:g.130963961A>T, NC_000010.10:g.132762224A>T

Select item 125724739.

rs12572473 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:130963704 (GRCh38)
10:132761967 (GRCh37)
Canonical SPDI:: NC_000010.11:130963703:G:A
Gene:: MIR378C (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00133/18 (TOMMO)
A=0.00294/5 (Korea1K)
A=0.04182/23 (NorthernSweden)
A=0.08539/5376 (GnomAD)
A=0.14317/717 (1000Genomes)
G=0.48148/52 (SGDP_PRJ)
G=0.5/5 (Siberian)
HGVS:: NC_000010.11:g.130963704G>A, NC_000010.10:g.132761967G>A

Select item 1257248010.

rs12572480 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 10:130963706 (GRCh38)
10:132761969 (GRCh37)
Canonical SPDI:: NC_000010.11:130963705:G:A,NC_000010.11:130963705:G:T
Gene:: MIR378C (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00735/108 (ALFA)
A=0.00118/2 (Korea1K)
A=0.167/13141 (PAGE_STUDY)
G=0.46429/13 (SGDP_PRJ)
G=0.5/1 (Siberian)
HGVS:: NC_000010.11:g.130963706G>A, NC_000010.11:g.130963706G>T, NC_000010.10:g.132761969G>A, NC_000010.10:g.132761969G>T

Select item 3581814011.

rs35818140 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 10:130962329 (GRCh38)
10:132760592 (GRCh37)
Canonical SPDI:: NC_000010.11:130962328:C:A,NC_000010.11:130962328:C:G
Gene:: MIR378C (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.144786/2735 (ALFA)
G=0.12963/28 (Qatari)
G=0.143743/533 (TWINSUK)
G=0.146485/38773 (TOPMED)
G=0.155/93 (NorthernSweden)
G=0.158018/609 (ALSPAC)
G=0.166333/166 (GoNL)
G=0.17433/781 (Estonian)
G=0.175/7 (GENOME_DK)
G=0.183167/917 (1000Genomes)
G=0.372284/6239 (TOMMO)
G=0.405568/743 (Korea1K)
G=0.435495/1276 (KOREAN)
C=0.441176/105 (SGDP_PRJ)
C=0.5/7 (Siberian)
HGVS:: NC_000010.11:g.130962329C>A, NC_000010.11:g.130962329C>G, NC_000010.10:g.132760592C>A, NC_000010.10:g.132760592C>G

Select item 5781355512.

rs57813555 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAGAGA>-,AAAAAAAAGAGAAAAAAAAAGAGA [Show Flanks]
Chromosome:: 10:130963696 (GRCh38)
10:132761959 (GRCh37)
Canonical SPDI:: NC_000010.11:130963694:AAAAAAAAAGAGA:A,NC_000010.11:130963694:AAAAAAAAAGAGA:AAAAAAAAAGAGAAAAAAAAAGAGA
Gene:: MIR378C (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.099342/1600 (ALFA)
-=0.008446/5 (NorthernSweden)
-=0.126384/16112 (GnomAD)
-=0.12972/481 (TWINSUK)
-=0.143228/552 (ALSPAC)
-=0.186901/936 (1000Genomes)
-=0.269869/4053 (TOMMO)
HGVS:: NC_000010.11:g.130963696_130963707del, NC_000010.11:g.130963696_130963707dup, NC_000010.10:g.132761959_132761970del, NC_000010.10:g.132761959_132761970dup

Select item 5869732713.

rs58697327 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:130963528 (GRCh38)
10:132761791 (GRCh37)
Canonical SPDI:: NC_000010.11:130963527:G:A
Gene:: MIR378C (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000043/6 (GnomAD)
A=0.000068/18 (TOPMED)
A=0.000312/2 (1000Genomes)
A=0.000425/7 (TOMMO)
HGVS:: NC_000010.11:g.130963528G>A, NC_000010.10:g.132761791G>A

Select item 7284781814.

rs72847818 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:130963020 (GRCh38)
10:132761283 (GRCh37)
Canonical SPDI:: NC_000010.11:130963019:T:C
Gene:: MIR378C (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.113505/1928 (ALFA)
C=0.052164/847 (TOMMO)
C=0.058489/6827 (GnomAD)
C=0.09/54 (NorthernSweden)
C=0.125/27 (Qatari)
C=0.184471/335 (Korea1K)
C=0.335836/984 (KOREAN)
T=0.5/112 (SGDP_PRJ)
T=0.5/7 (Siberian)
HGVS:: NC_000010.11:g.130963020T>C, NC_000010.10:g.132761283T>C

Select item 7338827915.

rs73388279 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 10:130964216 (GRCh38)
10:132762479 (GRCh37)
Canonical SPDI:: NC_000010.11:130964215:C:G
Gene:: MIR378C (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.001942/28 (ALFA)
G=0.002046/287 (GnomAD)
G=0.002138/566 (TOPMED)
G=0.002811/14 (1000Genomes)
HGVS:: NC_000010.11:g.130964216C>G, NC_000010.10:g.132762479C>G

Select item 7416080816.

rs74160808 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 10:130963228 (GRCh38)
10:132761491 (GRCh37)
Canonical SPDI:: NC_000010.11:130963227:A:T
Gene:: MIR378C (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.107994/2040 (ALFA)
T=0.002513/42 (TOMMO)
T=0.00655/12 (Korea1K)
T=0.007187/21 (KOREAN)
T=0.075/3 (GENOME_DK)
T=0.086352/432 (1000Genomes)
T=0.092857/416 (Estonian)
T=0.099896/385 (ALSPAC)
T=0.102751/381 (TWINSUK)
T=0.111927/29626 (TOPMED)
T=0.113302/15882 (GnomAD)
T=0.11523/115 (GoNL)
T=0.118333/71 (NorthernSweden)
T=0.12037/26 (Qatari)
A=0.442857/31 (SGDP_PRJ)
A=0.5/3 (Siberian)
HGVS:: NC_000010.11:g.130963228A>T, NC_000010.10:g.132761491A>T

Select item 7416080917.

rs74160809 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:130963907 (GRCh38)
10:132762170 (GRCh37)
Canonical SPDI:: NC_000010.11:130963906:A:G
Gene:: MIR378C (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.170106/3264 (ALFA)
G=0.002583/43 (TOMMO)
G=0.004717/1 (Vietnamese)
G=0.00655/12 (Korea1K)
G=0.007529/22 (KOREAN)
G=0.12963/28 (Qatari)
G=0.134291/673 (1000Genomes)
G=0.141295/633 (Estonian)
G=0.15/6 (GENOME_DK)
G=0.167099/644 (ALSPAC)
G=0.168337/168 (GoNL)
G=0.173409/643 (TWINSUK)
G=0.174109/46085 (TOPMED)
G=0.175932/24653 (GnomAD)
G=0.198333/119 (NorthernSweden)
A=0.423077/44 (SGDP_PRJ)
A=0.5/6 (Siberian)
HGVS:: NC_000010.11:g.130963907A>G, NC_000010.10:g.132762170A>G

Select item 7416081018.

rs74160810 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 10:130963939 (GRCh38)
10:132762202 (GRCh37)
Canonical SPDI:: NC_000010.11:130963938:C:G,NC_000010.11:130963938:C:T
Gene:: MIR378C (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.041604/663 (ALFA)
T=0.002583/43 (TOMMO)
T=0.00655/12 (Korea1K)
T=0.007187/21 (KOREAN)
T=0.075/3 (GENOME_DK)
T=0.09308/417 (Estonian)
T=0.099377/383 (ALSPAC)
T=0.102211/379 (TWINSUK)
T=0.111024/556 (1000Genomes)
T=0.11523/115 (GoNL)
T=0.118333/71 (NorthernSweden)
T=0.12963/28 (Qatari)
T=0.136076/36018 (TOPMED)
C=0.414634/34 (SGDP_PRJ)
C=0.5/3 (Siberian)
HGVS:: NC_000010.11:g.130963939C>G, NC_000010.11:g.130963939C>T, NC_000010.10:g.132762202C>G, NC_000010.10:g.132762202C>T

Select item 7416081119.

rs74160811 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 10:130964334 (GRCh38)
10:132762597 (GRCh37)
Canonical SPDI:: NC_000010.11:130964333:G:A,NC_000010.11:130964333:G:C,NC_000010.11:130964333:G:T
Gene:: MIR378C (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00013/2 (ALFA)
A=0.00125/6 (1000Genomes)
C=0.00258/43 (TOMMO)
C=0.00655/12 (Korea1K)
C=0.00719/21 (KOREAN)
C=0.075/3 (GENOME_DK)
C=0.09294/416 (Estonian)
C=0.09938/383 (ALSPAC)
C=0.10194/378 (TWINSUK)
C=0.11523/115 (GoNL)
C=0.11833/71 (NorthernSweden)
C=0.12963/28 (Qatari)
G=0.41463/34 (SGDP_PRJ)
G=0.5/3 (Siberian)
HGVS:: NC_000010.11:g.130964334G>A, NC_000010.11:g.130964334G>C, NC_000010.11:g.130964334G>T, NC_000010.10:g.132762597G>A, NC_000010.10:g.132762597G>C, NC_000010.10:g.132762597G>T

Select item 7530693820.

rs75306938 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 10:130962226 (GRCh38)
10:132760489 (GRCh37)
Canonical SPDI:: NC_000010.11:130962225:C:G
Gene:: MIR378C (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.009223/133 (ALFA)
G=0.009259/2 (Qatari)
G=0.010931/55 (1000Genomes)
G=0.012678/1778 (GnomAD)
G=0.013574/3593 (TOPMED)
C=0.4/4 (SGDP_PRJ)
HGVS:: NC_000010.11:g.130962226C>G, NC_000010.10:g.132760489C>G

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