MIR3169 - SNP

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Items: 1 to 20 of 917

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Select item 31022061.

rs3102206 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:61199319 (GRCh38)
13:61773453 (GRCh37)
Canonical SPDI:: NC_000013.11:61199318:C:T
Gene:: MIR3169 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.436316/8242 (ALFA)
T=0.2/8 (GENOME_DK)
T=0.226415/48 (Vietnamese)
C=0.264706/9 (Siberian)
C=0.306452/114 (SGDP_PRJ)
T=0.339509/1521 (Estonian)
T=0.378827/1460 (ALSPAC)
T=0.38/228 (NorthernSweden)
T=0.384574/1426 (TWINSUK)
T=0.38978/389 (GoNL)
T=0.409934/751 (Korea1K)
T=0.413793/6934 (TOMMO)
T=0.422867/1239 (KOREAN)
T=0.449074/97 (Qatari)
C=0.480619/127215 (TOPMED)
C=0.484072/2424 (1000Genomes)
C=0.496022/69074 (GnomAD)
HGVS:: NC_000013.11:g.61199319C>T, NC_000013.10:g.61773453C>T

Select item 31022072.

rs3102207 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 13:61199516 (GRCh38)
13:61773650 (GRCh37)
Canonical SPDI:: NC_000013.11:61199515:C:A,NC_000013.11:61199515:C:G,NC_000013.11:61199515:C:T
Gene:: MIR3169 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.222222/8 (Siberian)
C=0.290698/125 (SGDP_PRJ)
T=0.3/12 (GENOME_DK)
T=0.313084/67 (Vietnamese)
C=0.40286/106633 (TOPMED)
C=0.404747/2027 (1000Genomes)
T=0.448884/1730 (ALSPAC)
T=0.454693/1686 (TWINSUK)
T=0.455912/455 (GoNL)
T=0.466071/2088 (Estonian)
T=0.47/282 (NorthernSweden)
T=0.48417/887 (Korea1K)
T=0.489078/1433 (KOREAN)
T=0.490301/8216 (TOMMO)
T=0.490741/106 (Qatari)
HGVS:: NC_000013.11:g.61199516C>A, NC_000013.11:g.61199516C>G, NC_000013.11:g.61199516C>T, NC_000013.10:g.61773650C>A, NC_000013.10:g.61773650C>G, NC_000013.10:g.61773650C>T

Select item 95283003.

rs9528300 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:61200286 (GRCh38)
13:61774420 (GRCh37)
Canonical SPDI:: NC_000013.11:61200285:A:G
Gene:: MIR3169 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0./0 (HapMap)
G=0.000026/7 (TOPMED)
G=0.000043/6 (GnomAD)
HGVS:: NC_000013.11:g.61200286A>G, NC_000013.10:g.61774420A>G

Select item 95705014.

rs9570501 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 13:61201397 (GRCh38)
13:61775531 (GRCh37)
Canonical SPDI:: NC_000013.11:61201396:T:G
Gene:: MIR3169 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.05262/994 (ALFA)
G=0.025/1 (GENOME_DK)
G=0.031062/31 (GoNL)
G=0.031667/19 (NorthernSweden)
G=0.033472/129 (ALSPAC)
G=0.033981/126 (TWINSUK)
G=0.037037/8 (Qatari)
G=0.052902/237 (Estonian)
G=0.05398/14288 (TOPMED)
G=0.058033/8124 (GnomAD)
G=0.064164/188 (KOREAN)
G=0.064803/325 (1000Genomes)
G=0.070122/23 (HapMap)
G=0.076155/1276 (TOMMO)
G=0.080189/17 (Vietnamese)
T=0.4875/39 (SGDP_PRJ)
T=0.5/3 (Siberian)
HGVS:: NC_000013.11:g.61201397T>G, NC_000013.10:g.61775531T>G

Select item 118401325.

rs11840132 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 13:61201626 (GRCh38)
13:61775760 (GRCh37)
Canonical SPDI:: NC_000013.11:61201625:G:A,NC_000013.11:61201625:G:C
Gene:: MIR3169 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.002632/324 (ALFA)
A=0.00088/1 (Daghestan)
A=0.001002/1 (GoNL)
A=0.001597/1 (Chileans)
A=0.013889/3 (Qatari)
A=0.020628/5460 (TOPMED)
A=0.026702/134 (1000Genomes)
A=0.04068/55 (HapMap)
G=0.5/13 (SGDP_PRJ)
HGVS:: NC_000013.11:g.61201626G>A, NC_000013.11:g.61201626G>C, NC_000013.10:g.61775760G>A, NC_000013.10:g.61775760G>C

Select item 358639846.

rs35863984 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 13:61201437 (GRCh38)
13:61775572 (GRCh37)
Canonical SPDI:: NC_000013.11:61201437:TTT:TTTT
Gene:: MIR3169 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
HGVS:: NC_000013.11:g.61201440dup, NC_000013.10:g.61775574dup

Select item 735507837.

rs73550783 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 13:61200079 (GRCh38)
13:61774213 (GRCh37)
Canonical SPDI:: NC_000013.11:61200078:C:G,NC_000013.11:61200078:C:T
Gene:: MIR3169 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.00701/208 (ALFA)
T=0.002004/2 (GoNL)
T=0.003892/15 (ALSPAC)
T=0.004854/18 (TWINSUK)
T=0.007812/35 (Estonian)
T=0.008333/5 (NorthernSweden)
T=0.046296/10 (Qatari)
T=0.064457/17061 (TOPMED)
T=0.071518/358 (1000Genomes)
T=0.433333/13 (SGDP_PRJ)
HGVS:: NC_000013.11:g.61200079C>G, NC_000013.11:g.61200079C>T, NC_000013.10:g.61774213C>G, NC_000013.10:g.61774213C>T

Select item 740806348.

rs74080634 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:61200672 (GRCh38)
13:61774806 (GRCh37)
Canonical SPDI:: NC_000013.11:61200671:T:C
Gene:: MIR3169 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.014008/202 (ALFA)
C=0.001002/1 (GoNL)
C=0.013889/3 (Qatari)
C=0.019337/2707 (GnomAD)
C=0.020605/5454 (TOPMED)
C=0.026702/134 (1000Genomes)
T=0.5/13 (SGDP_PRJ)
HGVS:: NC_000013.11:g.61200672T>C, NC_000013.10:g.61774806T>C

Select item 751551039.

rs75155103 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 13:61200864 (GRCh38)
13:61774998 (GRCh37)
Canonical SPDI:: NC_000013.11:61200863:T:C,NC_000013.11:61200863:T:G
Gene:: MIR3169 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000693/10 (ALFA)
G=0.000976/136 (GnomAD)
G=0.00153/405 (TOPMED)
G=0.005465/27 (1000Genomes)
G=0.019511/327 (TOMMO)
G=0.020876/61 (KOREAN)
G=0.060185/13 (Vietnamese)
T=0.375/6 (SGDP_PRJ)
T=0.5/1 (Siberian)
HGVS:: NC_000013.11:g.61200864T>C, NC_000013.11:g.61200864T>G, NC_000013.10:g.61774998T>C, NC_000013.10:g.61774998T>G

Select item 7631744010.

rs76317440 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 13:61199611 (GRCh38)
13:61773745 (GRCh37)
Canonical SPDI:: NC_000013.11:61199610:T:C,NC_000013.11:61199610:T:G
Gene:: MIR3169 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.05763/1672 (ALFA)
C=0.04167/9 (Qatari)
C=0.06451/189 (KOREAN)
C=0.06613/66 (GoNL)
C=0.07012/260 (TWINSUK)
C=0.07032/271 (ALSPAC)
C=0.07601/1274 (TOMMO)
C=0.07886/395 (1000Genomes)
C=0.07944/17 (Vietnamese)
C=0.09/54 (NorthernSweden)
C=0.1/4 (GENOME_DK)
C=0.12634/566 (Estonian)
T=0.47778/43 (SGDP_PRJ)
T=0.5/5 (Siberian)
HGVS:: NC_000013.11:g.61199611T>C, NC_000013.11:g.61199611T>G, NC_000013.10:g.61773745T>C, NC_000013.10:g.61773745T>G

Select item 7780244711.

rs77802447 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:61199969 (GRCh38)
13:61774103 (GRCh37)
Canonical SPDI:: NC_000013.11:61199968:A:G
Gene:: MIR3169 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.002705/39 (ALFA)
G=0.002004/2 (GoNL)
G=0.004413/1168 (TOPMED)
G=0.00443/620 (GnomAD)
G=0.004841/24 (1000Genomes)
A=0.5/2 (SGDP_PRJ)
HGVS:: NC_000013.11:g.61199969A>G, NC_000013.10:g.61774103A>G

Select item 7851551612.

rs78515516 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:61200939 (GRCh38)
13:61775073 (GRCh37)
Canonical SPDI:: NC_000013.11:61200938:A:G
Gene:: MIR3169 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.00641/123 (ALFA)
G=0.002004/2 (GoNL)
G=0.003892/15 (ALSPAC)
G=0.004315/16 (TWINSUK)
G=0.00463/1 (Qatari)
G=0.004957/694 (GnomAD)
G=0.005565/1473 (TOPMED)
G=0.007812/35 (Estonian)
G=0.008333/5 (NorthernSweden)
G=0.012024/60 (1000Genomes)
G=0.013801/231 (TOMMO)
G=0.019165/56 (KOREAN)
G=0.020742/38 (Korea1K)
A=0.5/1 (Siberian)
A=0.5/5 (SGDP_PRJ)
HGVS:: NC_000013.11:g.61200939A>G, NC_000013.10:g.61775073A>G

Select item 7866001613.

rs78660016 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:61199533 (GRCh38)
13:61773667 (GRCh37)
Canonical SPDI:: NC_000013.11:61199532:T:C
Gene:: MIR3169 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.001165/22 (ALFA)
C=0.000212/4 (TOMMO)
C=0.000249/66 (TOPMED)
C=0.0004/56 (GnomAD)
C=0.000781/4 (1000Genomes)
C=0.001638/3 (Korea1K)
C=0.002053/6 (KOREAN)
C=0.004911/22 (Estonian)
HGVS:: NC_000013.11:g.61199533T>C, NC_000013.10:g.61773667T>C

Select item 11199425114.

rs111994251 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:61199942 (GRCh38)
13:61774076 (GRCh37)
Canonical SPDI:: NC_000013.11:61199941:T:C
Gene:: MIR3169 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.002965/56 (ALFA)
C=0.000625/3 (1000Genomes)
C=0.001002/1 (GoNL)
C=0.001541/408 (TOPMED)
C=0.001743/244 (GnomAD)
C=0.002157/8 (TWINSUK)
C=0.002335/9 (ALSPAC)
C=0.003125/14 (Estonian)
C=0.025/1 (GENOME_DK)
HGVS:: NC_000013.11:g.61199942T>C, NC_000013.10:g.61774076T>C

Select item 13949736615.

rs139497366 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 13:61201602 (GRCh38)
13:61775736 (GRCh37)
Canonical SPDI:: NC_000013.11:61201601:A:T
Gene:: MIR3169 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: T=0.0002/1 (1000Genomes)
HGVS:: NC_000013.11:g.61201602A>T, NC_000013.10:g.61775736A>T

Select item 14172267616.

rs141722676 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:61200836 (GRCh38)
13:61774970 (GRCh37)
Canonical SPDI:: NC_000013.11:61200835:G:A
Gene:: MIR3169 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.005062/73 (ALFA)
A=0.008012/1116 (GnomAD)
A=0.008236/2180 (TOPMED)
A=0.009838/49 (1000Genomes)
G=0.5/1 (SGDP_PRJ)
HGVS:: NC_000013.11:g.61200836G>A, NC_000013.10:g.61774970G>A

Select item 15054168117.

rs150541681 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATT>-,ATTATT [Show Flanks]
Chromosome:: 13:61199337 (GRCh38)
13:61773471 (GRCh37)
Canonical SPDI:: NC_000013.11:61199329:TATTATTATT:TATTATT,NC_000013.11:61199329:TATTATTATT:TATTATTATTATT
Gene:: MIR3169 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TATTATT=0.004484/63 (ALFA)
-=0.000035/1 (TOMMO)
-=0.005627/786 (GnomAD)
-=0.005973/1581 (TOPMED)
-=0.006871/34 (1000Genomes)
HGVS:: NC_000013.11:g.61199331ATT[2], NC_000013.11:g.61199331ATT[4], NC_000013.10:g.61773465ATT[2], NC_000013.10:g.61773465ATT[4]

Select item 18101614718.

rs181016147 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:61200150 (GRCh38)
13:61774284 (GRCh37)
Canonical SPDI:: NC_000013.11:61200149:A:G
Gene:: MIR3169 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000029/4 (GnomAD)
G=0.000156/1 (1000Genomes)
HGVS:: NC_000013.11:g.61200150A>G, NC_000013.10:g.61774284A>G

Select item 18215718319.

rs182157183 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 13:61199476 (GRCh38)
13:61773610 (GRCh37)
Canonical SPDI:: NC_000013.11:61199475:A:G,NC_000013.11:61199475:A:T
Gene:: MIR3169 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000049/13 (TOPMED)
G=0.000312/2 (1000Genomes)
HGVS:: NC_000013.11:g.61199476A>G, NC_000013.11:g.61199476A>T, NC_000013.10:g.61773610A>G, NC_000013.10:g.61773610A>T

Select item 18287843020.

rs182878430 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 13:61201526 (GRCh38)
13:61775660 (GRCh37)
Canonical SPDI:: NC_000013.11:61201525:T:A,NC_000013.11:61201525:T:C
Gene:: MIR3169 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.00565/106 (ALFA)
A=0.00055/1 (Korea1K)
C=0.00265/13 (1000Genomes)
C=0.00882/34 (ALSPAC)
C=0.00971/36 (TWINSUK)
C=0.01167/7 (NorthernSweden)
C=0.01202/12 (GoNL)
C=0.01763/79 (Estonian)
HGVS:: NC_000013.11:g.61201526T>A, NC_000013.11:g.61201526T>C, NC_000013.10:g.61775660T>A, NC_000013.10:g.61775660T>C

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