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    Results: 1 to 20 of 35

    1.

    The textual characteristics of traditional and Open Access scientific journals are similar.

    Verspoor K, Cohen KB, Hunter L.

    BMC Bioinformatics. 2009 Jun 15;10:183.PMID: 19527520 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    U-Compare: share and compare text mining tools with UIMA.

    Kano Y, Baumgartner WA Jr, McCrohon L, Ananiadou S, Cohen KB, Hunter L, Tsujii J.

    Bioinformatics. 2009 Aug 1;25(15):1997-8. Epub 2009 May 4.PMID: 19414535 [PubMed - in process]Related articlesFree article

    3.

    Leveraging existing biological knowledge in the identification of candidate genes for facial dysmorphology.

    Tipney HJ, Leach SM, Feng W, Spritz R, Williams T, Hunter L.

    BMC Bioinformatics. 2009 Feb 5;10 Suppl 2:S12.PMID: 19208187 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Detecting coevolution without phylogenetic trees? Tree-ignorant metrics of coevolution perform as well as tree-aware metrics.

    Caporaso JG, Smit S, Easton BC, Hunter L, Huttley GA, Knight R.

    BMC Evol Biol. 2008 Dec 3;8:327.PMID: 19055758 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Concept recognition for extracting protein interaction relations from biomedical text.

    Baumgartner WA Jr, Lu Z, Johnson HL, Caporaso JG, Paquette J, Lindemann A, White EK, Medvedeva O, Cohen KB, Hunter L.

    Genome Biol. 2008;9 Suppl 2:S9. Epub 2008 Sep 1.PMID: 18834500 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    Overview of BioCreative II gene normalization.

    Morgan AA, Lu Z, Wang X, Cohen AM, Fluck J, Ruch P, Divoli A, Fundel K, Leaman R, Hakenberg J, Sun C, Liu HH, Torres R, Krauthammer M, Lau WW, Liu H, Hsu CN, Schuemie M, Cohen KB, Hirschman L.

    Genome Biol. 2008;9 Suppl 2:S3. Epub 2008 Sep 1.PMID: 18834494 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    Predicting protein linkages in bacteria: which method is best depends on task.

    Karimpour-Fard A, Leach SM, Gill RT, Hunter LE.

    BMC Bioinformatics. 2008 Sep 24;9:397.PMID: 18816389 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Nominalization and alternations in biomedical language.

    Cohen KB, Palmer M, Hunter L.

    PLoS One. 2008 Sep 9;3(9):e3158.PMID: 18779866 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    The topology of the bacterial co-conserved protein network and its implications for predicting protein function.

    Karimpour-Fard A, Leach SM, Hunter LE, Gill RT.

    BMC Genomics. 2008 Jun 30;9:313.PMID: 18590549 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    Semantic role labeling for protein transport predicates.

    Bethard S, Lu Z, Martin JH, Hunter L.

    BMC Bioinformatics. 2008 Jun 11;9:277.PMID: 18547432 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    Identification of OBO nonalignments and its implications for OBO enrichment.

    Bada M, Hunter L.

    Bioinformatics. 2008 Jun 15;24(12):1448-55. Epub 2008 May 7.PMID: 18463117 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    Improving protein function prediction methods with integrated literature data.

    Gabow AP, Leach SM, Baumgartner WA, Hunter LE, Goldberg DS.

    BMC Bioinformatics. 2008 Apr 15;9:198.PMID: 18412966 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    OpenDMAP: an open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression.

    Hunter L, Lu Z, Firby J, Baumgartner WA Jr, Johnson HL, Ogren PV, Cohen KB.

    BMC Bioinformatics. 2008 Jan 31;9:78.PMID: 18237434 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    Intrinsic evaluation of text mining tools may not predict performance on realistic tasks.

    Caporaso JG, Deshpande N, Fink JL, Bourne PE, Cohen KB, Hunter L.

    Pac Symp Biocomput. 2008:640-51.PMID: 18229722 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    Rapid pattern development for concept recognition systems: application to point mutations.

    Caporaso JG, Baumgartner WA, Randolph DA, Cohen KB, Hunter L.

    J Bioinform Comput Biol. 2007 Dec;5(6):1233-59.PMID: 18172927 [PubMed - indexed for MEDLINE]Related articles

    16.

    Assessing and combining reliability of protein interaction sources.

    Leach S, Gabow A, Hunter L, Goldberg DS.

    Pac Symp Biocomput. 2007:433-44.PMID: 17990508 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    GeneRIF quality assurance as summary revision.

    Lu Z, Cohen KB, Hunter L.

    Pac Symp Biocomput. 2007:269-80.PMID: 17990498 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    A fault model for ontology mapping, alignment, and linking systems.

    Johnson HL, Cohen KB, Hunter L.

    Pac Symp Biocomput. 2007:233-44.PMID: 17990495 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    Frontiers of biomedical text mining: current progress.

    Zweigenbaum P, Demner-Fushman D, Yu H, Cohen KB.

    Brief Bioinform. 2007 Sep;8(5):358-75. Epub 2007 Oct 30. Review.PMID: 17977867 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    Investigation of factors affecting prediction of protein-protein interaction networks by phylogenetic profiling.

    Karimpour-Fard A, Hunter L, Gill RT.

    BMC Genomics. 2007 Oct 29;8:393.PMID: 17967189 [PubMed - indexed for MEDLINE]Related articlesFree article

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