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Evolution of Protein Binding Modes in Homooligomers.

Dayhoff JE, Shoemaker BA, Bryant SH, Panchenko AR.

J Mol Biol. 2009 Oct 30. [Epub ahead of print]PMID: 19879880 [PubMed - as supplied by publisher]Related articles

Inferred Biomolecular Interaction Server--a web server to analyze and predict protein interacting partners and binding sites.

Shoemaker BA, Zhang D, Thangudu RR, Tyagi M, Fong JH, Marchler-Bauer A, Bryant SH, Madej T, Panchenko AR.

Nucleic Acids Res. 2009 Oct 20. [Epub ahead of print]PMID: 19843613 [PubMed - as supplied by publisher]Related articlesFree article

Exploring functional roles of multibinding protein interfaces.

Tyagi M, Shoemaker BA, Bryant SH, Panchenko AR.

Protein Sci. 2009 Aug;18(8):1674-83.PMID: 19591200 [PubMed - indexed for MEDLINE]Related articles

Ensemble approach to predict specificity determinants: benchmarking and validation.

Chakrabarti S, Panchenko AR.

BMC Bioinformatics. 2009 Jul 2;10:207.PMID: 19573245 [PubMed - indexed for MEDLINE]Related articlesFree article

Prediction of functionally important sites from protein sequences using sparse kernel least squares classifiers.

Tang K, Pugalenthi G, Suganthan PN, Lanczycki CJ, Chakrabarti S.

Biochem Biophys Res Commun. 2009 Jun 26;384(2):155-9. Epub 2009 Apr 24.PMID: 19394310 [PubMed - indexed for MEDLINE]Related articlesFree article

Modeling effects of human single nucleotide polymorphisms on protein-protein interactions.

Teng S, Madej T, Panchenko A, Alexov E.

Biophys J. 2009 Mar 18;96(6):2178-88. Erratum in: Biophys J. 2009 Jun 3;96(11):4753. PMID: 19289044 [PubMed - indexed for MEDLINE]Related articles

Intrinsic disorder in protein interactions: insights from a comprehensive structural analysis.

Fong JH, Shoemaker BA, Garbuzynskiy SO, Lobanov MY, Galzitskaya OV, Panchenko AR.

PLoS Comput Biol. 2009 Mar;5(3):e1000316. Epub 2009 Mar 13.PMID: 19282967 [PubMed - indexed for MEDLINE]Related articlesFree article

Correlated evolution of interacting proteins: looking behind the mirrortree.

Kann MG, Shoemaker BA, Panchenko AR, Przytycka TM.

J Mol Biol. 2009 Jan 9;385(1):91-8. Epub 2008 Oct 9.PMID: 18930732 [PubMed - indexed for MEDLINE]Related articles

Coevolution in defining the functional specificity.

Chakrabarti S, Panchenko AR.

Proteins. 2009 Apr;75(1):231-40.PMID: 18831050 [PubMed - indexed for MEDLINE]Related articles