Similar articles for PMID: 22140105

Year	Number of Results
1998	1
1999	1
2001	1
2002	2
2003	4
2004	4
2005	6
2006	5
2007	7
2008	10
2009	3
2010	8
2011	13
2012	19
2013	24
2014	12
2015	8
2016	7
2017	1
2018	6
2019	3
2020	5
2022	4
2023	5
2024	0

1

ScerTF: a comprehensive database of benchmarked position weight matrices for Saccharomyces species.

Spivak AT, Stormo GD. Spivak AT, et al. Nucleic Acids Res. 2012 Jan;40(Database issue):D162-8. doi: 10.1093/nar/gkr1180. Epub 2011 Dec 2. Nucleic Acids Res. 2012. PMID: 22140105 Free PMC article.

2

YeTFaSCo: a database of evaluated yeast transcription factor sequence specificities.

de Boer CG, Hughes TR. de Boer CG, et al. Nucleic Acids Res. 2012 Jan;40(Database issue):D169-79. doi: 10.1093/nar/gkr993. Epub 2011 Nov 18. Nucleic Acids Res. 2012. PMID: 22102575 Free PMC article.

3

MYBS: a comprehensive web server for mining transcription factor binding sites in yeast.

Tsai HK, Chou MY, Shih CH, Huang GT, Chang TH, Li WH. Tsai HK, et al. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W221-6. doi: 10.1093/nar/gkm379. Epub 2007 May 30. Nucleic Acids Res. 2007. PMID: 17537814 Free PMC article.

4

FlyFactorSurvey: a database of Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system.

Zhu LJ, Christensen RG, Kazemian M, Hull CJ, Enuameh MS, Basciotta MD, Brasefield JA, Zhu C, Asriyan Y, Lapointe DS, Sinha S, Wolfe SA, Brodsky MH. Zhu LJ, et al. Nucleic Acids Res. 2011 Jan;39(Database issue):D111-7. doi: 10.1093/nar/gkq858. Epub 2010 Nov 19. Nucleic Acids Res. 2011. PMID: 21097781 Free PMC article.

5

YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface.

Abdulrehman D, Monteiro PT, Teixeira MC, Mira NP, Lourenço AB, dos Santos SC, Cabrito TR, Francisco AP, Madeira SC, Aires RS, Oliveira AL, Sá-Correia I, Freitas AT. Abdulrehman D, et al. Nucleic Acids Res. 2011 Jan;39(Database issue):D136-40. doi: 10.1093/nar/gkq964. Epub 2010 Oct 23. Nucleic Acids Res. 2011. PMID: 20972212 Free PMC article.

6

The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae.

Teixeira MC, Monteiro P, Jain P, Tenreiro S, Fernandes AR, Mira NP, Alenquer M, Freitas AT, Oliveira AL, Sá-Correia I. Teixeira MC, et al. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D446-51. doi: 10.1093/nar/gkj013. Nucleic Acids Res. 2006. PMID: 16381908 Free PMC article.

7

abc4pwm: affinity based clustering for position weight matrices in applications of DNA sequence analysis.

Ali O, Farooq A, Yang M, Jin VX, Bjørås M, Wang J. Ali O, et al. BMC Bioinformatics. 2022 Mar 3;23(1):83. doi: 10.1186/s12859-022-04615-z. BMC Bioinformatics. 2022. PMID: 35240993 Free PMC article.

8

High-resolution DNA-binding specificity analysis of yeast transcription factors.

Zhu C, Byers KJ, McCord RP, Shi Z, Berger MF, Newburger DE, Saulrieta K, Smith Z, Shah MV, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A, Murthy T, Labaer J, Bulyk ML. Zhu C, et al. Genome Res. 2009 Apr;19(4):556-66. doi: 10.1101/gr.090233.108. Epub 2009 Jan 21. Genome Res. 2009. PMID: 19158363 Free PMC article.

9

Identification of co-occurring transcription factor binding sites from DNA sequence using clustered position weight matrices.

Oh YM, Kim JK, Choi S, Yoo JY. Oh YM, et al. Nucleic Acids Res. 2012 Mar;40(5):e38. doi: 10.1093/nar/gkr1252. Epub 2011 Dec 19. Nucleic Acids Res. 2012. PMID: 22187154 Free PMC article.

10

SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates.

Pachkov M, Balwierz PJ, Arnold P, Ozonov E, van Nimwegen E. Pachkov M, et al. Nucleic Acids Res. 2013 Jan;41(Database issue):D214-20. doi: 10.1093/nar/gks1145. Epub 2012 Nov 24. Nucleic Acids Res. 2013. PMID: 23180783 Free PMC article.

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