Similar articles for PMID: 19956739

Year	Number of Results
1995	1
1996	3
1997	1
1998	2
2000	6
2001	1
2002	6
2003	1
2004	2
2005	3
2006	5
2007	3
2008	6
2009	10
2010	11
2011	4
2012	3
2013	4
2014	6
2015	3
2016	5
2017	4
2018	4
2019	7
2020	4
2021	3
2022	1
2023	1
2024	0

1

An evolutionary model-based algorithm for accurate phylogenetic breakpoint mapping and subtype prediction in HIV-1.

Kosakovsky Pond SL, Posada D, Stawiski E, Chappey C, Poon AF, Hughes G, Fearnhill E, Gravenor MB, Leigh Brown AJ, Frost SD. Kosakovsky Pond SL, et al. PLoS Comput Biol. 2009 Nov;5(11):e1000581. doi: 10.1371/journal.pcbi.1000581. Epub 2009 Nov 26. PLoS Comput Biol. 2009. PMID: 19956739 Free PMC article.

2

Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: performance evaluation of the new REGA version 3 and seven other tools.

Pineda-Peña AC, Faria NR, Imbrechts S, Libin P, Abecasis AB, Deforche K, Gómez-López A, Camacho RJ, de Oliveira T, Vandamme AM. Pineda-Peña AC, et al. Infect Genet Evol. 2013 Oct;19:337-48. doi: 10.1016/j.meegid.2013.04.032. Epub 2013 May 7. Infect Genet Evol. 2013. PMID: 23660484 Free article.

3

[HIV-1 subtype distribution determined by phylogenetic analysis of pol gene sequences and automated subtyping tools among HIV-1 isolates from the Aegian Region of Turkey].

Uluer Biçeroğlu S, Altuğlu I, Nazli Zeka A, Gökengin D, Yazan Sertöz R. Uluer Biçeroğlu S, et al. Mikrobiyol Bul. 2014 Jul;48(3):420-8. doi: 10.5578/mb.7609. Mikrobiyol Bul. 2014. PMID: 25052108 Free article. Turkish.

4

Novel HIV-1 recombinants spreading across multiple risk groups in the United Kingdom: the identification and phylogeography of Circulating Recombinant Form (CRF) 50_A1D.

Foster GM, Ambrose JC, Hué S, Delpech VC, Fearnhill E, Abecasis AB, Leigh Brown AJ, Geretti AM; UK HIV Drug Resistance Database. Foster GM, et al. PLoS One. 2014 Jan 15;9(1):e83337. doi: 10.1371/journal.pone.0083337. eCollection 2014. PLoS One. 2014. PMID: 24454702 Free PMC article.

5

Comparative HIV-1 Phylogenies Characterized by PR/RT, Pol and Near-Full-Length Genome Sequences.

Topcu C, Georgiou V, Rodosthenous JH, Kostrikis LG. Topcu C, et al. Viruses. 2022 Oct 17;14(10):2286. doi: 10.3390/v14102286. Viruses. 2022. PMID: 36298841 Free PMC article.

6

Streamlined Subpopulation, Subtype, and Recombination Analysis of HIV-1 Half-Genome Sequences Generated by High-Throughput Sequencing.

Hora B, Gulzar N, Chen Y, Karagiannis K, Cai F, Su C, Smith K, Simonyan V, Shah SA, Ahmed M, Sanchez AM, Stone M, Cohen MS, Denny TN, Mazumder R, Gao F. Hora B, et al. mSphere. 2020 Oct 14;5(5):e00551-20. doi: 10.1128/mSphere.00551-20. mSphere. 2020. PMID: 33055255 Free PMC article.

7

Comparative Evaluation of Subtyping Tools for Surveillance of Newly Emerging HIV-1 Strains.

Fabeni L, Berno G, Fokam J, Bertoli A, Alteri C, Gori C, Forbici F, Takou D, Vergori A, Zaccarelli M, Maffongelli G, Borghi V, Latini A, Pennica A, Mastroianni CM, Montella F, Mussini C, Andreoni M, Antinori A, Perno CF, Santoro MM; Resistance Study Group. Fabeni L, et al. J Clin Microbiol. 2017 Sep;55(9):2827-2837. doi: 10.1128/JCM.00656-17. Epub 2017 Jul 12. J Clin Microbiol. 2017. PMID: 28701420 Free PMC article.

8

COMET: adaptive context-based modeling for ultrafast HIV-1 subtype identification.

Struck D, Lawyer G, Ternes AM, Schmit JC, Bercoff DP. Struck D, et al. Nucleic Acids Res. 2014 Oct;42(18):e144. doi: 10.1093/nar/gku739. Epub 2014 Aug 12. Nucleic Acids Res. 2014. PMID: 25120265 Free PMC article.

9

Recombination confounds the early evolutionary history of human immunodeficiency virus type 1: subtype G is a circulating recombinant form.

Abecasis AB, Lemey P, Vidal N, de Oliveira T, Peeters M, Camacho R, Shapiro B, Rambaut A, Vandamme AM. Abecasis AB, et al. J Virol. 2007 Aug;81(16):8543-51. doi: 10.1128/JVI.00463-07. Epub 2007 Jun 6. J Virol. 2007. PMID: 17553886 Free PMC article.

10

The heterosexual human immunodeficiency virus type 1 epidemic in Thailand is caused by an intersubtype (A/E) recombinant of African origin.

Gao F, Robertson DL, Morrison SG, Hui H, Craig S, Decker J, Fultz PN, Girard M, Shaw GM, Hahn BH, Sharp PM. Gao F, et al. J Virol. 1996 Oct;70(10):7013-29. doi: 10.1128/JVI.70.10.7013-7029.1996. J Virol. 1996. PMID: 8794346 Free PMC article.

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