PubMed

Profiles of global gene expression in ionizing-radiation-damaged human diploid fibroblasts reveal synchronization behind the G1 checkpoint in a G0-like state of quiescence.

Zhou T, Chou JW, Simpson DA, Zhou Y, Mullen TE, Medeiros M, Bushel PR, Paules RS, Yang X, Hurban P, Lobenhofer EK, Kaufmann WK.

Environ Health Perspect. 2006 Apr;114(4):553-9.PMID: 16581545 [PubMed - indexed for MEDLINE]Related articlesFree article

Rosetta error model for gene expression analysis.

Weng L, Dai H, Zhan Y, He Y, Stepaniants SB, Bassett DE.

Bioinformatics. 2006 May 1;22(9):1111-21. Epub 2006 Mar 7.PMID: 16522673 [PubMed - indexed for MEDLINE]Related articlesFree article

Saturated fatty acids induce endoplasmic reticulum stress and apoptosis independently of ceramide in liver cells.

Wei Y, Wang D, Topczewski F, Pagliassotti MJ.

Am J Physiol Endocrinol Metab. 2006 Aug;291(2):E275-81. Epub 2006 Feb 21.PMID: 16492686 [PubMed - indexed for MEDLINE]Related articlesFree article

Cellular response to endoplasmic reticulum stress: a matter of life or death.

Boyce M, Yuan J.

Cell Death Differ. 2006 Mar;13(3):363-73. Review.PMID: 16397583 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene expression analysis of the hepatotoxicant methapyrilene in primary rat hepatocytes: an interlaboratory study.

Beekman JM, Boess F, Hildebrand H, Kalkuhl A, Suter L.

Environ Health Perspect. 2006 Jan;114(1):92-9.PMID: 16393664 [PubMed - indexed for MEDLINE]Related articlesFree article

Molecular mechanism investigation of cycloheximide-induced hepatocyte apoptosis in rat livers by morphological and microarray analysis.

Ito K, Kiyosawa N, Kumagai K, Manabe S, Matsunuma N, Yamoto T.

Toxicology. 2006 Feb 15;219(1-3):175-86. Epub 2005 Dec 20.PMID: 16368179 [PubMed - indexed for MEDLINE]Related articles

Mitochondrial perturbation attenuates bile acid-induced cytotoxicity.

Payne CM, Crowley-Weber CL, Dvorak K, Bernstein C, Bernstein H, Holubec H, Crowley C, Garewal H.

Cell Biol Toxicol. 2005 Sep-Nov;21(5-6):215-31.PMID: 16323058 [PubMed - indexed for MEDLINE]Related articles

Coordination of ER and oxidative stress signaling: the PERK/Nrf2 signaling pathway.

Cullinan SB, Diehl JA.

Int J Biochem Cell Biol. 2006 Mar;38(3):317-32. Epub 2005 Oct 28. Review.PMID: 16290097 [PubMed - indexed for MEDLINE]Related articles

The mammalian unfolded protein response.

Schröder M, Kaufman RJ.

Annu Rev Biochem. 2005;74:739-89. Review.PMID: 15952902 [PubMed - indexed for MEDLINE]Related articles

Hepatitis C virus core triggers apoptosis in liver cells by inducing ER stress and ER calcium depletion.

Benali-Furet NL, Chami M, Houel L, De Giorgi F, Vernejoul F, Lagorce D, Buscail L, Bartenschlager R, Ichas F, Rizzuto R, Paterlini-Bréchot P.

Oncogene. 2005 Jul 21;24(31):4921-33.PMID: 15897896 [PubMed - indexed for MEDLINE]Related articles

Standardizing global gene expression analysis between laboratories and across platforms.

Bammler T, Beyer RP, Bhattacharya S, Boorman GA, Boyles A, Bradford BU, Bumgarner RE, Bushel PR, Chaturvedi K, Choi D, Cunningham ML, Deng S, Dressman HK, Fannin RD, Farin FM, Freedman JH, Fry RC, Harper A, Humble MC, Hurban P, Kavanagh TJ, Kaufmann WK, Kerr KF, Jing L, Lapidus JA, Lasarev MR, Li J, Li YJ, Lobenhofer EK, Lu X, Malek RL, Milton S, Nagalla SR, O'malley JP, Palmer VS, Pattee P, Paules RS, Perou CM, Phillips K, Qin LX, Qiu Y, Quigley SD, Rodland M, Rusyn I, Samson LD, Schwartz DA, Shi Y, Shin JL, Sieber SO, Slifer S, Speer MC, Spencer PS, Sproles DI, Swenberg JA, Suk WA, Sullivan RC, Tian R, Tennant RW, Todd SA, Tucker CJ, Van Houten B, Weis BK, Xuan S, Zarbl H; Members of the Toxicogenomics Research Consortium.

Nat Methods. 2005 May;2(5):351-6. Epub 2005 Apr 21. Erratum in: Nat Methods. 2005 Jun;2(6):477. PMID: 15846362 [PubMed - indexed for MEDLINE]Related articles

Hepatic gene expression changes throughout the day in the Fischer rat: implications for toxicogenomic experiments.

Boorman GA, Blackshear PE, Parker JS, Lobenhofer EK, Malarkey DE, Vallant MK, Gerken DK, Irwin RD.

Toxicol Sci. 2005 Jul;86(1):185-93. Epub 2005 Apr 6.PMID: 15814895 [PubMed - indexed for MEDLINE]Related articlesFree article

Nuclear receptors constitutive androstane receptor and pregnane X receptor ameliorate cholestatic liver injury.

Stedman CA, Liddle C, Coulter SA, Sonoda J, Alvarez JG, Moore DD, Evans RM, Downes M.

Proc Natl Acad Sci U S A. 2005 Feb 8;102(6):2063-8. Epub 2005 Jan 31.PMID: 15684063 [PubMed - indexed for MEDLINE]Related articlesFree article

Glycogen synthase kinase-3 mediates acetaminophen-induced apoptosis in human hepatoma cells.

Macanas-Pirard P, Yaacob NS, Lee PC, Holder JC, Hinton RH, Kass GE.

J Pharmacol Exp Ther. 2005 May;313(2):780-9. Epub 2005 Jan 21.PMID: 15665138 [PubMed - indexed for MEDLINE]Related articlesFree article

Toxicogenomics and systems toxicology: aims and prospects.

Waters MD, Fostel JM.

Nat Rev Genet. 2004 Dec;5(12):936-48. Review.PMID: 15573125 [PubMed - indexed for MEDLINE]Related articles

Integration of clinical and gene expression endpoints to explore furan-mediated hepatotoxicity.

Hamadeh HK, Jayadev S, Gaillard ET, Huang Q, Stoll R, Blanchard K, Chou J, Tucker CJ, Collins J, Maronpot R, Bushel P, Afshari CA.

Mutat Res. 2004 May 18;549(1-2):169-83.PMID: 15120969 [PubMed - indexed for MEDLINE]Related articles

Applications of microarrays with toxicologically relevant genes (tox genes) for the evaluation of chemical toxicants in Sprague Dawley rats in vivo and human hepatocytes in vitro.

Kier LD, Neft R, Tang L, Suizu R, Cook T, Onsurez K, Tiegler K, Sakai Y, Ortiz M, Nolan T, Sankar U, Li AP.

Mutat Res. 2004 May 18;549(1-2):101-13.PMID: 15120965 [PubMed - indexed for MEDLINE]Related articles

Gene expression profiling of rat livers reveals indicators of potential adverse effects.

Heinloth AN, Irwin RD, Boorman GA, Nettesheim P, Fannin RD, Sieber SO, Snell ML, Tucker CJ, Li L, Travlos GS, Vansant G, Blackshear PE, Tennant RW, Cunningham ML, Paules RS.

Toxicol Sci. 2004 Jul;80(1):193-202. Epub 2004 Apr 14.PMID: 15084756 [PubMed - indexed for MEDLINE]Related articlesFree article

Identification of putative gene based markers of renal toxicity.

Amin RP, Vickers AE, Sistare F, Thompson KL, Roman RJ, Lawton M, Kramer J, Hamadeh HK, Collins J, Grissom S, Bennett L, Tucker CJ, Wild S, Kind C, Oreffo V, Davis JW 2nd, Curtiss S, Naciff JM, Cunningham M, Tennant R, Stevens J, Car B, Bertram TA, Afshari CA.

Environ Health Perspect. 2004 Mar;112(4):465-79.PMID: 15033597 [PubMed - indexed for MEDLINE]Related articlesFree article

Interlaboratory evaluation of rat hepatic gene expression changes induced by methapyrilene.

Waring JF, Ulrich RG, Flint N, Morfitt D, Kalkuhl A, Staedtler F, Lawton M, Beekman JM, Suter L.

Environ Health Perspect. 2004 Mar;112(4):439-48.PMID: 15033593 [PubMed - indexed for MEDLINE]Related articlesFree article