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Annotation and cross-indexing of array elements on multiple platforms.

Mattes WB.

Environ Health Perspect. 2004 Mar;112(4):506-10.PMID: 15033601 [PubMed - indexed for MEDLINE]Related articlesFree article

Toxicogenomics in risk assessment: an overview of an HESI collaborative research program.

Pennie W, Pettit SD, Lord PG.

Environ Health Perspect. 2004 Mar;112(4):417-9. Review.PMID: 15033589 [PubMed - indexed for MEDLINE]Related articlesFree article

ArrayTrack--supporting toxicogenomic research at the U.S. Food and Drug Administration National Center for Toxicological Research.

Tong W, Cao X, Harris S, Sun H, Fang H, Fuscoe J, Harris A, Hong H, Xie Q, Perkins R, Shi L, Casciano D.

Environ Health Perspect. 2003 Nov;111(15):1819-26. Review.PMID: 14630514 [PubMed - indexed for MEDLINE]Related articlesFree article

Computational selection of distinct class- and subclass-specific gene expression signatures.

Bushel PR, Hamadeh HK, Bennett L, Green J, Ableson A, Misener S, Afshari CA, Paules RS.

J Biomed Inform. 2002 Jun;35(3):160-70.PMID: 12669979 [PubMed - indexed for MEDLINE]Related articles

Application of genomics to toxicology research.

Thomas RS, Rank DR, Penn SG, Zastrow GM, Hayes KR, Hu T, Pande K, Lewis M, Jovanovich SB, Bradfield CA.

Environ Health Perspect. 2002 Dec;110 Suppl 6:919-23. Review.PMID: 12634120 [PubMed - indexed for MEDLINE]Related articlesFree article

The Stanford Microarray Database: data access and quality assessment tools.

Gollub J, Ball CA, Binkley G, Demeter J, Finkelstein DB, Hebert JM, Hernandez-Boussard T, Jin H, Kaloper M, Matese JC, Schroeder M, Brown PO, Botstein D, Sherlock G.

Nucleic Acids Res. 2003 Jan 1;31(1):94-6.PMID: 12519956 [PubMed - indexed for MEDLINE]Related articlesFree article

ArrayExpress--a public repository for microarray gene expression data at the EBI.

Brazma A, Parkinson H, Sarkans U, Shojatalab M, Vilo J, Abeygunawardena N, Holloway E, Kapushesky M, Kemmeren P, Lara GG, Oezcimen A, Rocca-Serra P, Sansone SA.

Nucleic Acids Res. 2003 Jan 1;31(1):68-71.PMID: 12519949 [PubMed - indexed for MEDLINE]Related articlesFree article

Medical applications of microarray technologies: a regulatory science perspective.

Petricoin EF 3rd, Hackett JL, Lesko LJ, Puri RK, Gutman SI, Chumakov K, Woodcock J, Feigal DW Jr, Zoon KC, Sistare FD.

Nat Genet. 2002 Dec;32 Suppl:474-9. Review.PMID: 12454641 [PubMed - indexed for MEDLINE]Related articles

Microarray databases: standards and ontologies.

Stoeckert CJ Jr, Causton HC, Ball CA.

Nat Genet. 2002 Dec;32 Suppl:469-73. Review.PMID: 12454640 [PubMed - indexed for MEDLINE]Related articles

Gene expression studies using microarrays: principles, problems, and prospects.

Murphy D.

Adv Physiol Educ. 2002 Dec;26(1-4):256-70. Review.PMID: 12443997 [PubMed - indexed for MEDLINE]Related articlesFree article

Standards for microarray data.

Ball CA, Sherlock G, Parkinson H, Rocca-Sera P, Brooksbank C, Causton HC, Cavalieri D, Gaasterland T, Hingamp P, Holstege F, Ringwald M, Spellman P, Stoeckert CJ Jr, Stewart JE, Taylor R, Brazma A, Quackenbush J; Microarray Gene Expression Data (MGED) Society.

Science. 2002 Oct 18;298(5593):539. No abstract available. PMID: 12387284 [PubMed - indexed for MEDLINE]Related articles

Design and implementation of microarray gene expression markup language (MAGE-ML).

Spellman PT, Miller M, Stewart J, Troup C, Sarkans U, Chervitz S, Bernhart D, Sherlock G, Ball C, Lepage M, Swiatek M, Marks WL, Goncalves J, Markel S, Iordan D, Shojatalab M, Pizarro A, White J, Hubley R, Deutsch E, Senger M, Aronow BJ, Robinson A, Bassett D, Stoeckert CJ Jr, Brazma A.

Genome Biol. 2002 Aug 23;3(9):RESEARCH0046. Epub 2002 Aug 23.PMID: 12225585 [PubMed - indexed for MEDLINE]Related articlesFree article

Statistical process control for large scale microarray experiments.

Model F, König T, Piepenbrock C, Adorján P.

Bioinformatics. 2002;18 Suppl 1:S155-63.PMID: 12169543 [PubMed - indexed for MEDLINE]Related articlesFree article

Toxicogenomics: a new revolution in drug safety.

Castle AL, Carver MP, Mendrick DL.

Drug Discov Today. 2002 Jul 1;7(13):728-36. Review.PMID: 12110229 [PubMed - indexed for MEDLINE]Related articles

Microarray data quality analysis: lessons from the AFGC project. Arabidopsis Functional Genomics Consortium.

Finkelstein D, Ewing R, Gollub J, Sterky F, Cherry JM, Somerville S.

Plant Mol Biol. 2002 Jan;48(1-2):119-31. Review.PMID: 11860205 [PubMed - indexed for MEDLINE]Related articles

CGO: utilizing and integrating gene expression microarray data in clinical research and data management.

Bumm K, Zheng M, Bailey C, Zhan F, Chiriva-Internati M, Eddlemon P, Terry J, Barlogie B, Shaughnessy JD Jr.

Bioinformatics. 2002 Feb;18(2):327-8.PMID: 11847084 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository.

Edgar R, Domrachev M, Lash AE.

Nucleic Acids Res. 2002 Jan 1;30(1):207-10.PMID: 11752295 [PubMed - indexed for MEDLINE]Related articlesFree article

Assessing gene significance from cDNA microarray expression data via mixed models.

Wolfinger RD, Gibson G, Wolfinger ED, Bennett L, Hamadeh H, Bushel P, Afshari C, Paules RS.

J Comput Biol. 2001;8(6):625-37.PMID: 11747616 [PubMed - indexed for MEDLINE]Related articles

Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.

Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, Stoeckert C, Aach J, Ansorge W, Ball CA, Causton HC, Gaasterland T, Glenisson P, Holstege FC, Kim IF, Markowitz V, Matese JC, Parkinson H, Robinson A, Sarkans U, Schulze-Kremer S, Stewart J, Taylor R, Vilo J, Vingron M.

Nat Genet. 2001 Dec;29(4):365-71.PMID: 11726920 [PubMed - indexed for MEDLINE]Related articles

A new approach to decoding life: systems biology.

Ideker T, Galitski T, Hood L.

Annu Rev Genomics Hum Genet. 2001;2:343-72. Review.PMID: 11701654 [PubMed - indexed for MEDLINE]Related articles