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    Results: 1 to 20 of 123

    1.

    The TAO-Gen algorithm for identifying gene interaction networks with application to SOS repair in E. coli.

    Yamanaka T, Toyoshiba H, Sone H, Parham FM, Portier CJ.

    Environ Health Perspect. 2004 Nov;112(16):1614-21.PMID: 15598612 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    Inference of gene networks from temporal gene expression profiles.

    Bansal M, di Bernardo D.

    IET Syst Biol. 2007 Sep;1(5):306-12.PMID: 17907680 [PubMed - indexed for MEDLINE]Related articles

    3.

    Genetic network identification using convex programming.

    Julius A, Zavlanos M, Boyd S, Pappas GJ.

    IET Syst Biol. 2009 May;3(3):155-66.PMID: 19449976 [PubMed - indexed for MEDLINE]Related articles

    4.

    Network evaluation from the consistency of the graph structure with the measured data.

    Saito S, Aburatani S, Horimoto K.

    BMC Syst Biol. 2008 Oct 1;2:84.PMID: 18828895 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Inference of gene regulatory networks and compound mode of action from time course gene expression profiles.

    Bansal M, Gatta GD, di Bernardo D.

    Bioinformatics. 2006 Apr 1;22(7):815-22. Epub 2006 Jan 17.PMID: 16418235 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    DNA array analysis of gene expression in response to UV irradiation in Escherichia coli.

    Quillardet P, Rouffaud MA, Bouige P.

    Res Microbiol. 2003 Oct;154(8):559-72.PMID: 14527657 [PubMed - indexed for MEDLINE]Related articles

    7.

    Identification of biochemical networks by S-tree based genetic programming.

    Cho DY, Cho KH, Zhang BT.

    Bioinformatics. 2006 Jul 1;22(13):1631-40. Epub 2006 Apr 3.PMID: 16585066 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    A generalized framework for network component analysis.

    Boscolo R, Sabatti C, Liao JC, Roychowdhury VP.

    IEEE/ACM Trans Comput Biol Bioinform. 2005 Oct-Dec;2(4):289-301.PMID: 17044167 [PubMed - indexed for MEDLINE]Related articles

    9.

    Bayesian sparse hidden components analysis for transcription regulation networks.

    Sabatti C, James GM.

    Bioinformatics. 2006 Mar 15;22(6):739-46. Epub 2005 Dec 20.PMID: 16368767 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    Identification of regulatory network topological units coordinating the genome-wide transcriptional response to glucose in Escherichia coli.

    Gutierrez-Ríos RM, Freyre-Gonzalez JA, Resendis O, Collado-Vides J, Saier M, Gosset G.

    BMC Microbiol. 2007 Jun 8;7:53.PMID: 17559662 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    Gene networks inference using dynamic Bayesian networks.

    Perrin BE, Ralaivola L, Mazurie A, Bottani S, Mallet J, d'Alché-Buc F.

    Bioinformatics. 2003 Oct;19 Suppl 2:ii138-48.PMID: 14534183 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    Factor analysis for gene regulatory networks and transcription factor activity profiles.

    Pournara I, Wernisch L.

    BMC Bioinformatics. 2007 Feb 23;8:61.PMID: 17319944 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    Reverse engineering genetic networks using evolutionary computation.

    Noman N, Iba H.

    Genome Inform. 2005;16(2):205-14.PMID: 16901103 [PubMed - indexed for MEDLINE]Related articles

    14.

    Gene expression analysis on biochemical networks using the Potts spin model.

    König R, Eils R.

    Bioinformatics. 2004 Jul 10;20(10):1500-5.PMID: 15231542 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    Weighted lasso in graphical Gaussian modeling for large gene network estimation based on microarray data.

    Shimamura T, Imoto S, Yamaguchi R, Miyano S.

    Genome Inform. 2007;19:142-53.PMID: 18546512 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    An effective structure learning method for constructing gene networks.

    Chen XW, Anantha G, Wang X.

    Bioinformatics. 2006 Jun 1;22(11):1367-74. Epub 2006 Mar 16.PMID: 16543279 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    Quantitative inference of dynamic regulatory pathways via microarray data.

    Chang WC, Li CW, Chen BS.

    BMC Bioinformatics. 2005 Mar 7;6:44.PMID: 15748298 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles.

    Faith JJ, Hayete B, Thaden JT, Mogno I, Wierzbowski J, Cottarel G, Kasif S, Collins JJ, Gardner TS.

    PLoS Biol. 2007 Jan;5(1):e8.PMID: 17214507 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    A hybrid Bayesian network learning method for constructing gene networks.

    Wang M, Chen Z, Cloutier S.

    Comput Biol Chem. 2007 Oct;31(5-6):361-72. Epub 2007 Aug 19.PMID: 17889617 [PubMed - indexed for MEDLINE]Related articles

    20.

    Synthetic tetracycline-inducible regulatory networks: computer-aided design of dynamic phenotypes.

    Sotiropoulos V, Kaznessis YN.

    BMC Syst Biol. 2007 Jan 9;1:7.PMID: 17408514 [PubMed - indexed for MEDLINE]Related articlesFree article

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