PubMed

Proteomic approaches to characterize protein modifications: new tools to study the effects of environmental exposures.

Liebler DC.

Environ Health Perspect. 2002 Feb;110 Suppl 1:3-9. Review.PMID: 11834459 [PubMed - indexed for MEDLINE]Related articlesFree article

Sequence mapping of epoxide adducts in human hemoglobin with LC-tandem MS and the SALSA algorithm.

Badghisi H, Liebler DC.

Chem Res Toxicol. 2002 Jun;15(6):799-805.PMID: 12067247 [PubMed - indexed for MEDLINE]Related articles

Identification of bacteria using tandem mass spectrometry combined with a proteome database and statistical scoring.

Dworzanski JP, Snyder AP, Chen R, Zhang H, Wishart D, Li L.

Anal Chem. 2004 Apr 15;76(8):2355-66.PMID: 15080748 [PubMed - indexed for MEDLINE]Related articles

The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: II. Evaluation of tandem mass spectrometry methodologies for large-scale protein analysis, and the application of statistical tools for data analysis and interpretation.

von Haller PD, Yi E, Donohoe S, Vaughn K, Keller A, Nesvizhskii AI, Eng J, Li XJ, Goodlett DR, Aebersold R, Watts JD.

Mol Cell Proteomics. 2003 Jul;2(7):428-42. Epub 2003 Jun 25.PMID: 12832459 [PubMed - indexed for MEDLINE]Related articlesFree article

Extended Range Proteomic Analysis (ERPA): a new and sensitive LC-MS platform for high sequence coverage of complex proteins with extensive post-translational modifications-comprehensive analysis of beta-casein and epidermal growth factor receptor (EGFR).

Wu SL, Kim J, Hancock WS, Karger B.

J Proteome Res. 2005 Jul-Aug;4(4):1155-70.PMID: 16083266 [PubMed - indexed for MEDLINE]Related articles

Label-free protein quantification using LC-coupled ion trap or FT mass spectrometry: Reproducibility, linearity, and application with complex proteomes.

Wang G, Wu WW, Zeng W, Chou CL, Shen RF.

J Proteome Res. 2006 May;5(5):1214-23.PMID: 16674111 [PubMed - indexed for MEDLINE]Related articles

Peptide sequence motif analysis of tandem MS data with the SALSA algorithm.

Liebler DC, Hansen BT, Davey SW, Tiscareno L, Mason DE.

Anal Chem. 2002 Jan 1;74(1):203-10.PMID: 11795795 [PubMed - indexed for MEDLINE]Related articles

Critical assessment of alignment procedures for LC-MS proteomics and metabolomics measurements.

Lange E, Tautenhahn R, Neumann S, Gröpl C.

BMC Bioinformatics. 2008 Sep 15;9:375.PMID: 18793413 [PubMed - indexed for MEDLINE]Related articlesFree article

VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins.

Matthiesen R, Trelle MB, Højrup P, Bunkenborg J, Jensen ON.

J Proteome Res. 2005 Nov-Dec;4(6):2338-47.PMID: 16335983 [PubMed - indexed for MEDLINE]Related articles

Profiling core proteomes of human cell lines by one-dimensional PAGE and liquid chromatography-tandem mass spectrometry.

Schirle M, Heurtier MA, Kuster B.

Mol Cell Proteomics. 2003 Dec;2(12):1297-305. Epub 2003 Oct 6.PMID: 14532353 [PubMed - indexed for MEDLINE]Related articlesFree article

Integration of two-dimensional LC-MS with multivariate statistics for comparative analysis of proteomic samples.

Gaspari M, Verhoeckx KC, Verheij ER, van der Greef J.

Anal Chem. 2006 Apr 1;78(7):2286-96.PMID: 16579610 [PubMed - indexed for MEDLINE]Related articles

Alignment of LC-MS images, with applications to biomarker discovery and protein identification.

Vandenbogaert M, Li-Thiao-Té S, Kaltenbach HM, Zhang R, Aittokallio T, Schwikowski B.

Proteomics. 2008 Feb;8(4):650-72. Review.PMID: 18297649 [PubMed - indexed for MEDLINE]Related articles

[Introduction of proteomic approach to environmental medicine]

Hiyoshi M, Uemura H, Takeda H, Kido H, Arisawa K.

Nippon Eiseigaku Zasshi. 2006 Sep;61(4):393-9. Review. Japanese. PMID: 17025216 [PubMed - indexed for MEDLINE]Related articles

P-Mod: an algorithm and software to map modifications to peptide sequences using tandem MS data.

Hansen BT, Davey SW, Ham AJ, Liebler DC.

J Proteome Res. 2005 Mar-Apr;4(2):358-68.PMID: 15822911 [PubMed - indexed for MEDLINE]Related articles

Phosphoproteomics by mass spectrometry and classical protein chemistry approaches.

Salih E.

Mass Spectrom Rev. 2005 Nov-Dec;24(6):828-46. Review.PMID: 15538747 [PubMed - indexed for MEDLINE]Related articles

Identification of protein fragments as pattern features in MALDI-MS analyses of serum.

Zimmerman LJ, Wernke GR, Caprioli RM, Liebler DC.

J Proteome Res. 2005 Sep-Oct;4(5):1672-80.PMID: 16212420 [PubMed - indexed for MEDLINE]Related articles

SALSA: a pattern recognition algorithm to detect electrophile-adducted peptides by automated evaluation of CID spectra in LC-MS-MS analyses.

Hansen BT, Jones JA, Mason DE, Liebler DC.

Anal Chem. 2001 Apr 15;73(8):1676-83.PMID: 11338579 [PubMed - indexed for MEDLINE]Related articles

Targeted proteomics of low-level proteins in human plasma by LC/MSn: using human growth hormone as a model system.

Wu SL, Amato H, Biringer R, Choudhary G, Shieh P, Hancock WS.

J Proteome Res. 2002 Sep-Oct;1(5):459-65.PMID: 12645918 [PubMed - indexed for MEDLINE]Related articles

A software suite for the generation and comparison of peptide arrays from sets of data collected by liquid chromatography-mass spectrometry.

Li XJ, Yi EC, Kemp CJ, Zhang H, Aebersold R.

Mol Cell Proteomics. 2005 Sep;4(9):1328-40. Epub 2005 Jul 26.PMID: 16048906 [PubMed - indexed for MEDLINE]Related articlesFree article

Gel-free mass spectrometry-based high throughput proteomics: tools for studying biological response of proteins and proteomes.

Roe MR, Griffin TJ.

Proteomics. 2006 Sep;6(17):4678-87. Review.PMID: 16888762 [PubMed - indexed for MEDLINE]Related articles