U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    ELOC elongin C [ Pan troglodytes (chimpanzee) ]

    Gene ID: 464236, updated on 13-Apr-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    ELOC
    Gene description
    elongin C
    Locus tag
    CK820_G0022323
    See related
    Ensembl:ENSPTRG00000046987
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Also known as
    TCEB1
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 7
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 7 NC_072405.2 (82600586..82626511, complement)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 8 NC_072406.1 (87612818..87638723, complement)

    Chromosome 7 - NC_072405.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107976342 Neighboring gene glycogenin-1-like Neighboring gene small ribosomal subunit protein uS10-like Neighboring gene transmembrane protein 70

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Selection on human genes as revealed by comparisons to chimpanzee cDNA. Hellmann I, et al. Genome Res, 2003 May. PMID 12727903, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein-macromolecule adaptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of elongin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    elongin-C
    Names
    transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)
    transcription elongation factor B subunit 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001252005.1 → NP_001238934.1  elongin-C

      See identical proteins and their annotated locations for NP_001238934.1

      Status: VALIDATED

      Source sequence(s)
      CB297394, JAQQLN020000007
      UniProtKB/TrEMBL
      A0A2J8M9T2, A0A6D2WP16, K7AZJ3
      Related
      ENSPTRP00000072390.1, ENSPTRT00000099322.1
      Conserved Domains (1) summary
      cd18321
      Location:18 → 112
      BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins

    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072405.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      82600586..82626511 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016958899.4 → XP_016814388.1  elongin-C isoform X1

      UniProtKB/TrEMBL
      A0A2J8M9T2, A0A6D2WP16, K7AZJ3
      Conserved Domains (1) summary
      cd18321
      Location:18 → 112
      BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins

    2. XM_016958904.4 → XP_016814393.1  elongin-C isoform X2

      UniProtKB/TrEMBL
      A0A2J8M9T5
      Conserved Domains (1) summary
      cd18321
      Location:2 → 96
      BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins

    3. XM_054656390.2 → XP_054512365.1  elongin-C isoform X1

      UniProtKB/TrEMBL
      A0A2J8M9T2, A0A6D2WP16, K7AZJ3

    4. XM_016958903.4 → XP_016814392.1  elongin-C isoform X2

      UniProtKB/TrEMBL
      A0A2J8M9T5
      Conserved Domains (1) summary
      cd18321
      Location:2 → 96
      BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins

    5. XM_024344936.3 → XP_024200704.1  elongin-C isoform X1

      UniProtKB/TrEMBL
      A0A2J8M9T2, A0A6D2WP16, K7AZJ3
      Conserved Domains (1) summary
      cd18321
      Location:18 → 112
      BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins

    6. XM_016958901.3 → XP_016814390.1  elongin-C isoform X1

      UniProtKB/TrEMBL
      A0A2J8M9T2, A0A6D2WP16, K7AZJ3
      Conserved Domains (1) summary
      cd18321
      Location:18 → 112
      BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins

    7. XM_063816018.1 → XP_063672088.1  elongin-C isoform X1

      UniProtKB/TrEMBL
      A0A2J8M9T2, A0A6D2WP16, K7AZJ3

    8. XM_063816020.1 → XP_063672090.1  elongin-C isoform X1

      UniProtKB/TrEMBL
      A0A2J8M9T2, A0A6D2WP16, K7AZJ3

    9. XM_063816017.1 → XP_063672087.1  elongin-C isoform X1

      UniProtKB/TrEMBL
      A0A2J8M9T2, A0A6D2WP16, K7AZJ3

    10. XM_016958900.3 → XP_016814389.1  elongin-C isoform X1

      UniProtKB/TrEMBL
      A0A2J8M9T2, A0A6D2WP16, K7AZJ3
      Related
      ENSPTRP00000090043.1
      Conserved Domains (1) summary
      cd18321
      Location:18 → 112
      BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins

    11. XM_063816021.1 → XP_063672091.1  elongin-C isoform X1

      UniProtKB/TrEMBL
      A0A2J8M9T2, A0A6D2WP16, K7AZJ3

    12. XM_054656391.2 → XP_054512366.1  elongin-C isoform X1

      UniProtKB/TrEMBL
      A0A2J8M9T2, A0A6D2WP16, K7AZJ3
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.