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1: | Reconstructing the ubiquitin network - cross-talk with other systems and identification of novel functions Thiago M Venancio, S Balaji, Lakshminarayan M Iyer, and L Aravind PMCID: PMC2691004 | |
2: | Reconstructing prokaryotic transcriptional regulatory networks: lessons from actinobacteria Thiago M Venancio and L Aravind PMCID: PMC2689436 | |
3: | Anatomy of the E2 ligase fold: implications for enzymology and evolution of ubiquitin/Ub-like protein conjugation A. Maxwell Burroughs, Marcie Jaffee, Lakshminarayan M. Iyer, and L. Aravind PMCID: PMC2701696 Published in final edited form as: J Struct Biol. 2008 May; 162(2): 205–218. Published online 2008 January 1. doi: 10.1016/j.jsb.2007.12.006. | |
4: | Pathogenic Roles of CD14, Galectin-3, and OX40 during Experimental Cerebral Malaria in Mice Miranda S. Oakley, Victoria Majam, Babita Mahajan, Noel Gerald, Vivek Anantharaman, Jerrold M. Ward, Lawrence J. Faucette, Thomas F. McCutchan, Hong Zheng, Masaki Terabe, Jay A. Berzofsky, L. Aravind, and Sanjai Kumar PMCID: PMC2728507 | |
5: | Conversion of 5-Methylcytosine to 5-Hydroxymethylcytosine in Mammalian DNA by MLL Partner TET1 Mamta Tahiliani, Kian Peng Koh, Yinghua Shen, William A. Pastor, Hozefa Bandukwala, Yevgeny Brudno, Suneet Agarwal, Lakshminarayan M. Iyer, David R. Liu, L. Aravind, and Anjana Rao PMCID: PMC2715015 Published in final edited form as: Science. 2009 May 15; 324(5929): 930–935. Published online 2009 April 16. doi: 10.1126/science.1170116. | |
6: | The Anabaena sensory rhodopsin transducer defines a novel superfamily of prokaryotic small-molecule binding domains Robson F De Souza, Lakshminarayan M Iyer, and L Aravind PMCID: PMC2739507 | |
7: | Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture Raja Jothi, S Balaji, Arthur Wuster, Joshua A Grochow, Jörg Gsponer, Teresa M Przytycka, L Aravind, and M Madan Babu PMCID: PMC2736650 | |
8: | Comparison of transcription regulatory interactions inferred from high throughput methods: what do they reveal? S. Balaji, Lakshminarayan. M. Iyer, M. Madan Babu, and L. Aravind PMCID: PMC2768723 Published in final edited form as: Trends Genet. 2008 July; 24(7): 319–323. doi: 10.1016/j.tig.2008.04.006. | |
9: | Host Biomarkers and Biological Pathways That Are Associated with the Expression of Experimental Cerebral Malaria in Mice Miranda S. Oakley, Thomas F. McCutchan, Vivek Anantharaman, Jerrold M. Ward, Laurence Faucette, Cindy Erexson, Babita Mahajan, Hong Zheng, Victoria Majam, L. Aravind, and Sanjai Kumar PMCID: PMC2546852 | |
10: | MutL homologs in restriction-modification systems and the origin of eukaryotic MORC ATPases Lakshminarayan M Iyer, Saraswathi Abhiman, and L Aravind PMCID: PMC2292703 | |
11: | A new family of polymerases related to superfamily A DNA polymerases and T7-like DNA-dependent RNA polymerases Lakshminarayan M Iyer, Saraswathi Abhiman, and L Aravind PMCID: PMC2579912 | |
12: | Unraveling the biochemistry and provenance of pupylation: a prokaryotic analog of ubiquitination Lakshminarayan M Iyer, AM Burroughs, and L Aravind PMCID: PMC2588565 | |
13: | Domain architectures of the Scm3p protein provide insights into centromere function and evolution L. Aravind, M. Iyer Lakshminarayan, and Carl Wu PMCID: PMC2394858 Published in final edited form as: Cell Cycle. 2007 October 15; 6(20): 2511–2515. Published online 2007 July 24. | |
14: | AMIN domains have a predicted role in localization of diverse periplasmic protein complexes Robson Francisco de Souza, Vivek Anantharaman, Sandro José de Souza, L. Aravind, and Frederico J. Gueiros-Filho PMCID: PMC2572700 | |
15: | Interplay between network structures, regulatory modes and sensing mechanisms of transcription factors in the transcriptional regulatory network of E. coli S. Balaji, M. Madan Babu, and L. Aravind PMCID: PMC2422858 Published in final edited form as: J Mol Biol. 2007 September 28; 372(4): 1108–1122. Published online 2007 July 3. doi: 10.1016/j.jmb.2007.06.084. | |
16: | Analysis of DBC1 and its homologs suggests a potential mechanism for regulation of Sirtuin domain deacetylases by NAD metabolites Vivek Anantharaman and L. Aravind PMCID: PMC2423810 Published in final edited form as: Cell Cycle. 2008 May; 7(10): 1467–1472. Published online 2008 February 29. | |
17: | BEN: A novel domain in chromatin factors and DNA viral proteins Saraswathi Abhiman, Lakshminarayan M. Iyer, and L. Aravind PMCID: PMC2477736 Published in final edited form as: Bioinformatics. 2008 February 15; 24(4): 458–461. Published online 2008 January 18. doi: 10.1093/bioinformatics/btn007. | |
18: | Differences in evolutionary pressure acting within highly conserved ortholog groups Teresa M Przytycka, Raja Jothi, L Aravind, and David J Lipman PMCID: PMC2488352 | |
19: | The RAGNYA fold: a novel fold with multiple topological variants found in functionally diverse nucleic acid, nucleotide and peptide-binding proteins S. Balaji and L. Aravind PMCID: PMC2034487 | |
20: | A novel superfamily containing the β-grasp fold involved in binding diverse soluble ligands A Maxwell Burroughs, S Balaji, Lakshminarayan M Iyer, and L Aravind PMCID: PMC1796856 | |
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