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    LOC102228829 AT-rich interactive domain-containing protein 1B-like [ Xiphophorus maculatus (southern platyfish) ]

    Gene ID: 102228829, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC102228829
    Gene description
    AT-rich interactive domain-containing protein 1B-like
    See related
    Ensembl:ENSXMAG00000006338
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xiphophorus maculatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
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    Genomic context

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    See LOC102228829 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    102 current X_maculatus-5.0-male (GCF_002775205.1) 19 NC_036461.1 (11020147..11216252, complement)
    101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372334.1 (71374..265072)

    Chromosome 19 - NC_036461.1Genomic Context describing neighboring genes Neighboring gene galectin-8-like Neighboring gene probable palmitoyltransferase ZDHHC14 Neighboring gene kelch repeat and BTB domain containing 11 Neighboring gene Rho guanine nucleotide exchange factor (GEF) 10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SWI/SNF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of brahma complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nBAF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AT-rich interactive domain-containing protein 1B-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference X_maculatus-5.0-male Primary Assembly

    Genomic

    1. NC_036461.1 Reference X_maculatus-5.0-male Primary Assembly

      Range
      11020147..11216252 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023353033.1 → XP_023208801.1  AT-rich interactive domain-containing protein 1B-like isoform X2

      UniProtKB/TrEMBL
      M3ZVW7
      Related
      ENSXMAP00000006361.2, ENSXMAT00000006369.2
      Conserved Domains (4) summary
      smart00501
      Location:994 → 1085
      BRIGHT; ARID (A/T-rich interaction domain) domain
      pfam09606
      Location:1189 → 1531
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam12031
      Location:1911 → 2166
      BAF250_C; SWI/SNF-like complex subunit BAF250/Osa
      cl26464
      Location:418 → 902
      Atrophin-1; Atrophin-1 family

    2. XM_014471447.2 → XP_014326933.1  AT-rich interactive domain-containing protein 1B-like isoform X1

      Conserved Domains (4) summary
      smart00501
      Location:995 → 1086
      BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
      pfam09606
      Location:275 → 718
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam12031
      Location:1912 → 2167
      DUF3518; Domain of unknown function (DUF3518)
      pfam14179
      Location:461 → 523
      YppG; YppG-like protein
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases