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    hsf2 heat shock transcription factor 2 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100125207, updated on 8-Mar-2024

    Summary

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    Official Symbol
    hsf2provided by Xenbase
    Official Full Name
    heat shock transcription factor 2provided by Xenbase
    Primary source
    Xenbase:XB-GENE-954977
    See related
    Ensembl:ENSXETG00000023290
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (65324590..65350347)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (68082146..68107922)

    Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene lebercilin Neighboring gene heat shock factor 2, gene 2 Neighboring gene serine incorporator 1, gene 1 Neighboring gene protein kinase (cAMP-dependent, catalytic) inhibitor beta

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    heat shock factor protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      65324590..65350347
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002937216.5 → XP_002937262.1  heat shock factor protein 2 isoform X2

      UniProtKB/TrEMBL
      A0A8J0QNA5, F6UAI0
      Related
      ENSXETP00000050320.4, ENSXETT00000050320.5
      Conserved Domains (2) summary
      smart00415
      Location:6 → 110
      HSF; heat shock factor
      pfam06546
      Location:230 → 491
      Vert_HS_TF; Vertebrate heat shock transcription factor

    2. XM_002937217.5 → XP_002937263.1  heat shock factor protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A6I8QJX9, F6UAI0
      Related
      ENSXETP00000069935.2, ENSXETT00000074711.2
      Conserved Domains (2) summary
      smart00415
      Location:48 → 126
      HSF; heat shock factor
      pfam06546
      Location:246 → 507
      Vert_HS_TF; Vertebrate heat shock transcription factor
    Nucleotide Protein Strain
    Heading Accession and Version

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