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    BCL11B BCL11 transcription factor B [ Tursiops truncatus (common bottlenose dolphin) ]

    Gene ID: 101333177, updated on 8-Mar-2024

    Summary

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    Gene symbol
    BCL11B
    Gene description
    BCL11 transcription factor B
    See related
    EnsemblRapid:ENSTTRG00000012140
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tursiops truncatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Tursiops
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current mTurTru1.mat.Y (GCF_011762595.1) 2 NC_047035.1 (5915040..6011146)
    101 previous assembly NIST Tur_tru v1 (GCF_001922835.1) Unplaced Scaffold NW_017842414.1 (3621384..3628641)

    Chromosome 2 - NC_047035.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 85C Neighboring gene cyclin K Neighboring gene SET domain containing 3, actin N3(tau)-histidine methyltransferase Neighboring gene uncharacterized LOC109552965 Neighboring gene uncharacterized LOC109552969

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    B-cell lymphoma/leukemia 11B
    Names
    B cell CLL/lymphoma 11B
    BAF chromatin remodeling complex subunit BCL11B
    BCL11B, BAF complex component

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Tursiops truncatus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mTurTru1.mat.Y Primary Assembly

    Genomic

    1. NC_047035.1 Reference mTurTru1.mat.Y Primary Assembly

      Range
      5915040..6011146
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_033850640.1 → XP_033706531.1  B-cell lymphoma/leukemia 11B isoform X1

      UniProtKB/TrEMBL
      A0A6J3QVX4
      Related
      ENSTTRP00000019696.1, ENSTTRT00000040134.1
      Conserved Domains (4) summary
      sd00017
      Location:808 → 828
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:430 → 450
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:807 → 828
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:820 → 845
      zf-H2C2_2; Zinc-finger double domain

    2. XM_033850642.1 → XP_033706533.1  B-cell lymphoma/leukemia 11B isoform X3

      UniProtKB/TrEMBL
      A0A6J3QXH2
      Related
      ENSTTRP00000033110.1, ENSTTRT00000035542.1
      Conserved Domains (4) summary
      sd00017
      Location:736 → 756
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:358 → 378
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:735 → 756
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:748 → 773
      zf-H2C2_2; Zinc-finger double domain

    3. XM_033850641.1 → XP_033706532.1  B-cell lymphoma/leukemia 11B isoform X2

      UniProtKB/TrEMBL
      A0A6J3QW41
      Conserved Domains (4) summary
      sd00017
      Location:807 → 827
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:429 → 449
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:806 → 827
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:819 → 844
      zf-H2C2_2; Zinc-finger double domain

    4. XM_033850643.1 → XP_033706534.1  B-cell lymphoma/leukemia 11B isoform X4

      UniProtKB/TrEMBL
      A0A6J3QWK0
      Conserved Domains (4) summary
      sd00017
      Location:735 → 755
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:357 → 377
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:734 → 755
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:747 → 772
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

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