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    LOC101174341 nuclear receptor subfamily 1 group D member 1 [ Oryzias latipes (Japanese medaka) ]

    Gene ID: 101174341, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC101174341
    Gene description
    nuclear receptor subfamily 1 group D member 1
    See related
    EnsemblRapid:ENSORLG00000015399
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryzias latipes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current ASM223467v1 (GCF_002234675.1) 5 NC_019863.2 (27409497..27418719)
    102 previous assembly ASM31367v1 (GCF_000313675.1) 5 NC_019863.1 (29148723..29157844)

    Chromosome 5 - NC_019863.2Genomic Context describing neighboring genes Neighboring gene calcium binding and coiled-coil domain 1b Neighboring gene retinoic acid receptor gamma-A Neighboring gene RNA-binding motif, single-stranded-interacting protein 2 Neighboring gene Fas apoptotic inhibitory molecule 2b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in hormone-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retinoic acid receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear receptor subfamily 1 group D member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM223467v1 Primary Assembly

    Genomic

    1. NC_019863.2 Reference ASM223467v1 Primary Assembly

      Range
      27409497..27418719
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004069129.4 → XP_004069177.1  nuclear receptor subfamily 1 group D member 1

      UniProtKB/TrEMBL
      A0A3P9MFU7, H2MKQ4
      Related
      ENSORLP00000019274.2, ENSORLT00000019275.3
      Conserved Domains (2) summary
      cd07166
      Location:114 → 202
      NR_DBD_REV_ERB; DNA-binding domain of REV-ERB receptor-like is composed of two C4-type zinc fingers
      cl11397
      Location:378 → 566
      NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
    Nucleotide Protein
    Heading Accession and Version

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