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    batf basic leucine zipper transcription factor, ATF-like [ Oryzias latipes (Japanese medaka) ]

    Gene ID: 101168259, updated on 8-Mar-2024

    Summary

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    Gene symbol
    batf
    Gene description
    basic leucine zipper transcription factor, ATF-like
    See related
    EnsemblRapid:ENSORLG00000009061
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryzias latipes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
    Orthologs
    human zebrafish all
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    Genomic context

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    Location:
    chromosome: 24
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    103 current ASM223467v1 (GCF_002234675.1) 24 NC_019882.2 (1345404..1349746)
    102 previous assembly ASM31367v1 (GCF_000313675.1) 24 NC_019882.1 (530973..535327)

    Chromosome 24 - NC_019882.2Genomic Context describing neighboring genes Neighboring gene protein tyrosine kinase 2 beta, b Neighboring gene uncharacterized LOC105357127 Neighboring gene uncharacterized LOC110017712 Neighboring gene zinc finger CCCH-type containing 14 Neighboring gene FLVCR choline and putative heme transporter 2b Neighboring gene transforming growth factor beta-3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    basic leucine zipper transcriptional factor ATF-like
    Names
    basic leucine zipper ATF-like transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM223467v1 Primary Assembly

    Genomic

    1. NC_019882.2 Reference ASM223467v1 Primary Assembly

      Range
      1345404..1349746
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011491381.3 → XP_011489683.1  basic leucine zipper transcriptional factor ATF-like

      UniProtKB/TrEMBL
      A0A3P9JJX1, A0A3P9LN88
      Related
      ENSORLP00000011359.3, ENSORLT00000011360.3
      Conserved Domains (2) summary
      cd14686
      Location:29 → 80
      bZIP; coiled coil [structural motif]
      cl21462
      Location:26 → 83
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
    Nucleotide Protein
    Heading Accession and Version

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