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    pax9 paired box 9 [ Oreochromis niloticus (Nile tilapia) ]

    Gene ID: 100696344, updated on 8-Mar-2024

    Summary

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    Gene symbol
    pax9
    Gene description
    paired box 9
    See related
    Ensembl:ENSONIG00000000990
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oreochromis niloticus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
    Expression
    Biased expression in whole embryo (RPKM 6.6), skin (RPKM 2.3) and 1 other tissue See more
    Orthologs
    human zebrafish all
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    Genomic context

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    See pax9 in Genome Data Viewer
    Location:
    chromosome: LG19
    Exon count:
    4
    Annotation release Status Assembly LG Location
    104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG19 NC_031983.2 (18778493..18791127)
    103 previous assembly ASM185804v2 (GCF_001858045.1) LG19 NC_031983.1 (12016556..12025099, complement)

    Linkage Group LG19 - NC_031983.2Genomic Context describing neighboring genes Neighboring gene NK2 homeobox 1 Neighboring gene NK2 transcription factor related, locus 9 (Drosophila) Neighboring gene solute carrier family 25 member 21 Neighboring gene pleckstrin homology domain containing, family H (with MyTH4 domain) member 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Oreochromis niloticus Transcriptome or Gene expression
    • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
    • BioProject: PRJNA78915
    • Analysis date: Fri Dec 29 00:23:36 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    paired box protein Pax-9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference O_niloticus_UMD_NMBU Primary Assembly

    Genomic

    1. NC_031983.2 Reference O_niloticus_UMD_NMBU Primary Assembly

      Range
      18778493..18791127
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005477273.4 → XP_005477330.1  paired box protein Pax-9

      UniProtKB/TrEMBL
      A0A669BKA1, I3IXB5
      Related
      ENSONIP00000001255.2, ENSONIT00000001254.2
      Conserved Domains (1) summary
      cd00131
      Location:6 → 131
      PAX; Paired Box domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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