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    CBFA2T2 CBFA2/RUNX1 partner transcriptional co-repressor 2 [ Nomascus leucogenys (northern white-cheeked gibbon) ]

    Gene ID: 100598155, updated on 8-Mar-2024

    Summary

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    Gene symbol
    CBFA2T2
    Gene description
    CBFA2/RUNX1 partner transcriptional co-repressor 2
    See related
    EnsemblRapid:ENSNLEG00000009976
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nomascus leucogenys
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 13
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current Asia_NLE_v1 (GCF_006542625.1) 13 NC_044393.1 (30310857..30469712, complement)
    102 previous assembly Nleu_3.0 (GCF_000146795.2) 13 NC_019828.1 (31167792..31336225, complement)

    Chromosome 13 - NC_044393.1Genomic Context describing neighboring genes Neighboring gene chromosome 13 C20orf144 homolog Neighboring gene uncharacterized LOC115837932 Neighboring gene N-terminal EF-hand calcium binding protein 3 Neighboring gene actin like 10 Neighboring gene syntrophin alpha 1 Neighboring gene CDK5 regulatory subunit associated protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein CBFA2T2
    Names
    CBFA2/RUNX1 translocation partner 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Asia_NLE_v1 Primary Assembly

    Genomic

    1. NC_044393.1 Reference Asia_NLE_v1 Primary Assembly

      Range
      30310857..30469712 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003273537.4 → XP_003273585.1  protein CBFA2T2 isoform X1

      UniProtKB/TrEMBL
      A0A2I3G3J6, A0A2I3HX66
      Related
      ENSNLEP00000026759.2, ENSNLET00000034492.2
      Conserved Domains (4) summary
      PRK00409
      Location:429 → 497
      PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
      pfam01753
      Location:498 → 534
      zf-MYND; MYND finger
      pfam07531
      Location:106 → 195
      TAFH; NHR1 homology to TAF
      pfam08788
      Location:322 → 388
      NHR2; NHR2 domain like

    2. XM_003273538.4 → XP_003273586.1  protein CBFA2T2 isoform X3

      See identical proteins and their annotated locations for XP_003273586.1

      UniProtKB/TrEMBL
      A0A2I3G3J6, A0A2I3GH88
      Conserved Domains (4) summary
      PRK00409
      Location:409 → 477
      PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
      pfam01753
      Location:478 → 514
      zf-MYND; MYND finger
      pfam07531
      Location:86 → 175
      TAFH; NHR1 homology to TAF
      pfam08788
      Location:302 → 368
      NHR2; NHR2 domain like

    3. XM_030825469.1 → XP_030681329.1  protein CBFA2T2 isoform X2

      UniProtKB/TrEMBL
      A0A2I3G3J6
      Related
      ENSNLEP00000030653.2, ENSNLET00000055057.2
      Conserved Domains (4) summary
      PRK00409
      Location:433 → 496
      PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
      pfam01753
      Location:497 → 533
      zf-MYND; MYND finger
      pfam07531
      Location:106 → 195
      TAFH; NHR1 homology to TAF
      pfam08788
      Location:322 → 388
      NHR2; NHR2 domain like
    Nucleotide Protein
    Heading Accession and Version

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