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    smad10a SMAD family member 10a [ Gadus morhua (Atlantic cod) ]

    Gene ID: 115545114, updated on 17-Mar-2024

    Summary

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    Gene symbol
    smad10a
    Gene description
    SMAD family member 10a
    See related
    Ensembl:ENSGMOG00000000297
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gadus morhua
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
    Also known as
    si:dkey-222b8.1
    Orthologs
    zebrafish all
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current gadMor3.0 (GCF_902167405.1) 6 NC_044053.1 (3072883..3098981, complement)

    Chromosome 6 - NC_044053.1Genomic Context describing neighboring genes Neighboring gene putative butyrophilin subfamily 2 member A3 Neighboring gene butyrophilin subfamily 3 member A1-like Neighboring gene butyrophilin subfamily 3 member A2-like Neighboring gene synaptotagmin 11 Neighboring gene chromatin target of PRMT1 protein-like Neighboring gene acidic (leucine-rich) nuclear phosphoprotein 32 family, member E

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044053.1 Chromosome 6 Reference gadMor3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables I-SMAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in BMP signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in SMAD protein signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in anatomical structure morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transforming growth factor beta receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of heteromeric SMAD protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mothers against decapentaplegic homolog 4-like
    Names
    MH1_SMAD_4 and MH2_SMAD_4 domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference gadMor3.0 Primary Assembly

    Genomic

    1. NC_044053.1 Reference gadMor3.0 Primary Assembly

      Range
      3072883..3098981 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030357950.1 → XP_030213810.1  mothers against decapentaplegic homolog 4-like

      UniProtKB/TrEMBL
      A0A8C4YTP5, A0A8C5B5U8
      Conserved Domains (3) summary
      cd10492
      Location:12 → 136
      MH1_SMAD_4; N-terminal Mad Homology 1 (MH1) domain in SMAD4
      cd10498
      Location:323 → 544
      MH2_SMAD_4; C-terminal Mad Homology 2 (MH2) domain in SMAD4
      pfam08493
      Location:257 → 329
      AflR; Aflatoxin regulatory protein

    2. XM_030357949.1 → XP_030213809.1  mothers against decapentaplegic homolog 4-like

      UniProtKB/TrEMBL
      A0A8C4YTP5, A0A8C5B5U8
      Conserved Domains (3) summary
      cd10492
      Location:12 → 136
      MH1_SMAD_4; N-terminal Mad Homology 1 (MH1) domain in SMAD4
      cd10498
      Location:323 → 544
      MH2_SMAD_4; C-terminal Mad Homology 2 (MH2) domain in SMAD4
      pfam08493
      Location:257 → 329
      AflR; Aflatoxin regulatory protein

    3. XM_030357947.1 → XP_030213807.1  mothers against decapentaplegic homolog 4-like

      UniProtKB/TrEMBL
      A0A8C4YTP5, A0A8C5B5U8
      Conserved Domains (3) summary
      cd10492
      Location:12 → 136
      MH1_SMAD_4; N-terminal Mad Homology 1 (MH1) domain in SMAD4
      cd10498
      Location:323 → 544
      MH2_SMAD_4; C-terminal Mad Homology 2 (MH2) domain in SMAD4
      pfam08493
      Location:257 → 329
      AflR; Aflatoxin regulatory protein

    4. XM_030357948.1 → XP_030213808.1  mothers against decapentaplegic homolog 4-like

      UniProtKB/TrEMBL
      A0A8C4YTP5, A0A8C5B5U8
      Related
      ENSGMOP00000042407.1, ENSGMOT00000072330.1
      Conserved Domains (3) summary
      cd10492
      Location:12 → 136
      MH1_SMAD_4; N-terminal Mad Homology 1 (MH1) domain in SMAD4
      cd10498
      Location:323 → 544
      MH2_SMAD_4; C-terminal Mad Homology 2 (MH2) domain in SMAD4
      pfam08493
      Location:257 → 329
      AflR; Aflatoxin regulatory protein
    Nucleotide Protein
    Heading Accession and Version

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