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    RREB1 ras responsive element binding protein 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

    Gene ID: 100400368, updated on 3-Apr-2024

    Summary

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    Gene symbol
    RREB1
    Gene description
    ras responsive element binding protein 1
    See related
    Ensembl:ENSCJAG00000021358
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callithrix jacchus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 4 NC_071445.1 (21757620..21960885, complement)
    105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 4 NC_048386.1 (21433478..21636668, complement)

    Chromosome 4 - NC_071445.1Genomic Context describing neighboring genes Neighboring gene cancer antigen 1 Neighboring gene ATP synthase F(0) complex subunit C3, mitochondrial-like Neighboring gene uncharacterized LOC103792300 Neighboring gene signal sequence receptor subunit 1 Neighboring gene U7 small nuclear RNA Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5-like Neighboring gene uncharacterized LOC108591353 Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC108591355

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ras-responsive element-binding protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCalJa1.2.pat.X

    Genomic

    1. NC_071445.1 Reference mCalJa1.2.pat.X

      Range
      21757620..21960885 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035295013.2 → XP_035150904.1  ras-responsive element-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8I3WMM7, F7HEQ4, U3DM14
      Conserved Domains (8) summary
      smart00355
      Location:1249 → 1270
      ZnF_C2H2; zinc finger
      COG5048
      Location:64 → 246
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:68 → 88
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:792 → 814
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1597 → 1619
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:1583 → 1607
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:671 → 695
      zf-H2C2_5; C2H2-type zinc-finger domain
      pfam13912
      Location:1570 → 1591
      zf-C2H2_6; C2H2-type zinc finger

    2. XM_054253714.1 → XP_054109689.1  ras-responsive element-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      F7HEQ4, U3DM14

    3. XM_035295016.2 → XP_035150907.1  ras-responsive element-binding protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8I3WMM7
      Conserved Domains (7) summary
      COG5048
      Location:20 → 210
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:32 → 52
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:756 → 778
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1561 → 1583
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:1547 → 1571
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:635 → 659
      zf-H2C2_5; C2H2-type zinc-finger domain
      pfam13912
      Location:1534 → 1555
      zf-C2H2_6; C2H2-type zinc finger

    4. XM_035295014.2 → XP_035150905.1  ras-responsive element-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8I3WMM7, F7HEQ4, U3DM14
      Conserved Domains (8) summary
      smart00355
      Location:1249 → 1270
      ZnF_C2H2; zinc finger
      COG5048
      Location:64 → 246
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:68 → 88
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:792 → 814
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1597 → 1619
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:1583 → 1607
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:671 → 695
      zf-H2C2_5; C2H2-type zinc-finger domain
      pfam13912
      Location:1570 → 1591
      zf-C2H2_6; C2H2-type zinc finger

    5. XM_035295006.2 → XP_035150897.1  ras-responsive element-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8I3WMM7, F7HEQ4, U3DM14
      Conserved Domains (8) summary
      smart00355
      Location:1249 → 1270
      ZnF_C2H2; zinc finger
      COG5048
      Location:64 → 246
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:68 → 88
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:792 → 814
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1597 → 1619
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:1583 → 1607
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:671 → 695
      zf-H2C2_5; C2H2-type zinc-finger domain
      pfam13912
      Location:1570 → 1591
      zf-C2H2_6; C2H2-type zinc finger

    6. XM_035295018.2 → XP_035150909.1  ras-responsive element-binding protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8I3WMM7, F7HEQ8, U3E5C6
      Conserved Domains (8) summary
      smart00355
      Location:1249 → 1270
      ZnF_C2H2; zinc finger
      COG5048
      Location:64 → 246
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:68 → 88
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:792 → 814
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1542 → 1564
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:1528 → 1552
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:671 → 695
      zf-H2C2_5; C2H2-type zinc-finger domain
      pfam13912
      Location:1515 → 1536
      zf-C2H2_6; C2H2-type zinc finger

    7. XM_054253716.1 → XP_054109691.1  ras-responsive element-binding protein 1 isoform X2

    8. XM_054253715.1 → XP_054109690.1  ras-responsive element-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      F7HEQ4, U3DM14

    9. XM_017970931.3 → XP_017826420.2  ras-responsive element-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8I3WMM7, F7HEQ4, U3DM14
      Conserved Domains (8) summary
      smart00355
      Location:1249 → 1270
      ZnF_C2H2; zinc finger
      COG5048
      Location:64 → 246
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:68 → 88
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:792 → 814
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1597 → 1619
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:1583 → 1607
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:671 → 695
      zf-H2C2_5; C2H2-type zinc-finger domain
      pfam13912
      Location:1570 → 1591
      zf-C2H2_6; C2H2-type zinc finger

    10. XM_035295017.2 → XP_035150908.1  ras-responsive element-binding protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8I3WMM7
      Conserved Domains (7) summary
      COG5048
      Location:20 → 210
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:32 → 52
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:756 → 778
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1561 → 1583
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:1547 → 1571
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:635 → 659
      zf-H2C2_5; C2H2-type zinc-finger domain
      pfam13912
      Location:1534 → 1555
      zf-C2H2_6; C2H2-type zinc finger

    11. XM_035295007.2 → XP_035150898.1  ras-responsive element-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8I3WMM7, F7HEQ4, U3DM14
      Conserved Domains (8) summary
      smart00355
      Location:1249 → 1270
      ZnF_C2H2; zinc finger
      COG5048
      Location:64 → 246
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:68 → 88
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:792 → 814
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1597 → 1619
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:1583 → 1607
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:671 → 695
      zf-H2C2_5; C2H2-type zinc-finger domain
      pfam13912
      Location:1570 → 1591
      zf-C2H2_6; C2H2-type zinc finger

    12. XM_035295012.2 → XP_035150903.1  ras-responsive element-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8I3WMM7, F7HEQ4, U3DM14
      Conserved Domains (8) summary
      smart00355
      Location:1249 → 1270
      ZnF_C2H2; zinc finger
      COG5048
      Location:64 → 246
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:68 → 88
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:792 → 814
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1597 → 1619
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:1583 → 1607
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:671 → 695
      zf-H2C2_5; C2H2-type zinc-finger domain
      pfam13912
      Location:1570 → 1591
      zf-C2H2_6; C2H2-type zinc finger

    13. XM_035295015.2 → XP_035150906.1  ras-responsive element-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8I3WMM7, F7HEQ4, U3DM14
      Conserved Domains (8) summary
      smart00355
      Location:1249 → 1270
      ZnF_C2H2; zinc finger
      COG5048
      Location:64 → 246
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:68 → 88
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:792 → 814
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1597 → 1619
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:1583 → 1607
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:671 → 695
      zf-H2C2_5; C2H2-type zinc-finger domain
      pfam13912
      Location:1570 → 1591
      zf-C2H2_6; C2H2-type zinc finger

    14. XM_035295008.2 → XP_035150899.1  ras-responsive element-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8I3WMM7, F7HEQ4, U3DM14
      Conserved Domains (8) summary
      smart00355
      Location:1249 → 1270
      ZnF_C2H2; zinc finger
      COG5048
      Location:64 → 246
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:68 → 88
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:792 → 814
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1597 → 1619
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:1583 → 1607
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:671 → 695
      zf-H2C2_5; C2H2-type zinc-finger domain
      pfam13912
      Location:1570 → 1591
      zf-C2H2_6; C2H2-type zinc finger

    15. XM_035295009.2 → XP_035150900.1  ras-responsive element-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8I3WMM7, F7HEQ4, U3DM14
      Conserved Domains (8) summary
      smart00355
      Location:1249 → 1270
      ZnF_C2H2; zinc finger
      COG5048
      Location:64 → 246
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:68 → 88
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:792 → 814
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1597 → 1619
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:1583 → 1607
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:671 → 695
      zf-H2C2_5; C2H2-type zinc-finger domain
      pfam13912
      Location:1570 → 1591
      zf-C2H2_6; C2H2-type zinc finger

    16. XM_035295010.2 → XP_035150901.1  ras-responsive element-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8I3WMM7, F7HEQ4, U3DM14
      Conserved Domains (8) summary
      smart00355
      Location:1249 → 1270
      ZnF_C2H2; zinc finger
      COG5048
      Location:64 → 246
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:68 → 88
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:792 → 814
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1597 → 1619
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:1583 → 1607
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:671 → 695
      zf-H2C2_5; C2H2-type zinc-finger domain
      pfam13912
      Location:1570 → 1591
      zf-C2H2_6; C2H2-type zinc finger

    17. XM_054253717.1 → XP_054109692.1  ras-responsive element-binding protein 1 isoform X4

    18. XM_054253718.1 → XP_054109693.1  ras-responsive element-binding protein 1 isoform X5

    Nucleotide Protein
    Heading Accession and Version

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