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    rfx1 regulatory factor X1 [ Anolis carolinensis (green anole) ]

    Gene ID: 100559640, updated on 8-Mar-2024

    Summary

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    Gene symbol
    rfx1
    Gene description
    regulatory factor X1
    See related
    Ensembl:ENSACAG00000015671
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anolis carolinensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_02 current rAnoCar3.1.pri (GCF_035594765.1) 2 NC_085842.1 (197083143..197160021, complement)
    102 previous assembly AnoCar2.0 (GCF_000090745.1) 2 NC_014777.1 (76871328..76941915)

    Chromosome 2 - NC_085842.1Genomic Context describing neighboring genes Neighboring gene coiled-coil and C2 domain containing 1A Neighboring gene podocan like 1 Neighboring gene DDB1 and CUL4 associated factor 15 Neighboring gene uncharacterized LOC134296456 Neighboring gene relaxin 3 Neighboring gene interleukin 27 receptor subunit alpha

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    MHC class II regulatory factor RFX1
    Names
    regulatory factor X, 1 (influences HLA class II expression)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_035594765.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rAnoCar3.1.pri

    Genomic

    1. NC_085842.1 Reference rAnoCar3.1.pri

      Range
      197083143..197160021 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008103726.3 → XP_008101933.2  MHC class II regulatory factor RFX1 isoform X7

    2. XM_062971487.1 → XP_062827557.1  MHC class II regulatory factor RFX1 isoform X4

    3. XM_062971485.1 → XP_062827555.1  MHC class II regulatory factor RFX1 isoform X2

    4. XM_008103725.3 → XP_008101932.2  MHC class II regulatory factor RFX1 isoform X6

    5. XM_062971486.1 → XP_062827556.1  MHC class II regulatory factor RFX1 isoform X3

    6. XM_008103723.3 → XP_008101930.2  MHC class II regulatory factor RFX1 isoform X5

    7. XM_062971484.1 → XP_062827554.1  MHC class II regulatory factor RFX1 isoform X1

    8. XM_062971489.1 → XP_062827559.1  MHC class II regulatory factor RFX1 isoform X9

    9. XM_062971488.1 → XP_062827558.1  MHC class II regulatory factor RFX1 isoform X8

    Nucleotide Protein
    Heading Accession and Version

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