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pdeG putative c-di-GMP phosphodiesterase PdeG [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945738, updated on 4-Apr-2024

Summary

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Gene symbol
pdeG
Gene description
putative c-di-GMP phosphodiesterase PdeG
Primary source
ASAP:ABE-0003918
Locus tag
b1168
See related
ECOCYC:G6608
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1155; ycgG
Summary
Consistently co-purifies with the degradosome. [More information is available at EcoGene: EG13888]. YcgG consistently copurifies with the degradosome . [More information is available at EcoCyc: G6608].
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Genomic context

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Sequence:
NC_000913.3 (1217328..1218851)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative two-component system connector protein AriR Neighboring gene protein YmgC Neighboring gene inner membrane protein YmgF Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transmembrane redox control and proteolysis of PdeC, a novel type of c-di-GMP phosphodiesterase. Herbst S, et al. EMBO J, 2018 Apr 13. PMID 29514851, Free PMC Article
  2. Analysis of the Escherichia coli RNA degradosome composition by a proteomic approach. Regonesi ME, et al. Biochimie, 2006 Feb. PMID 16139413
  3. C-di-GMP: the dawning of a novel bacterial signalling system. Römling U, et al. Mol Microbiol, 2005 Aug. PMID 16045609
  4. Gene expression patterns and differential input into curli fimbriae regulation of all GGDEF/EAL domain proteins in Escherichia coli. Sommerfeldt N, et al. Microbiology (Reading), 2009 Apr. PMID 19332833
  5. Characterization of the rdar morphotype, a multicellular behaviour in Enterobacteriaceae. Römling U. Cell Mol Life Sci, 2005 Jun. PMID 15818467

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables cyclic-guanylate-specific phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in outer membrane-bounded periplasmic space RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 

General protein information

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Preferred Names
putative c-di-GMP phosphodiesterase PdeG

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1217328..1218851
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415686.2 putative c-di-GMP phosphodiesterase PdeG [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415686.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A3L9I4E6, A0A6L6ZV45
    Conserved Domains (2) summary
    PRK10551
    Location:8 → 494
    PRK10551; cyclic di-GMP phosphodiesterase
    smart00052
    Location:250 → 491
    EAL; Putative diguanylate phosphodiesterase
Nucleotide Protein
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