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ymdF stress-induced bacterial acidophilic repeat motifs-containing protein YmdF [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945598, updated on 6-Oct-2023

Summary

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Gene symbol
ymdF
Gene description
stress-induced bacterial acidophilic repeat motifs-containing protein YmdF
Primary source
ASAP:ABE-0285039
Locus tag
b4518
See related
ECOCYC:G0-10443
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0996
Summary
ymdF and yciG are paralogs. [More information is available at EcoGene: EG14358].
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Genomic context

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Sequence:
NC_000913.3 (1068081..1068254)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene PF13993 family protein YccJ Neighboring gene NAD(P)H:quinone oxidoreductase Neighboring gene pyrimidine:H(+) symporter Neighboring gene FMN reductase RutF

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A previously uncharacterized gene, PA2146, contributes to biofilm formation and drug tolerance across the ɣ-Proteobacteria. Kaleta MF, et al. NPJ Biofilms Microbiomes, 2022 Jul 7. PMID 35798749, Free PMC Article
  2. Climbing the protein ladder. Dovichi NJ. Nat Biotechnol, 2004 Oct. PMID 15470461
  3. Protein sequencing by mass analysis of polypeptide ladders after controlled protein hydrolysis. Zhong H, et al. Nat Biotechnol, 2004 Oct. PMID 15361881
  4. Interaction network containing conserved and essential protein complexes in Escherichia coli. Butland G, et al. Nature, 2005 Feb 3. PMID 15690043
  5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
acts_upstream_of_or_within cell adhesion involved in single-species biofilm formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
stress-induced bacterial acidophilic repeat motifs-containing protein YmdF

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1068081..1068254
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415525.2 stress-induced bacterial acidophilic repeat motifs-containing protein YmdF [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415525.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A828GE41
    Conserved Domains (1) summary
    COG3729
    Location:1 → 53
    GsiB; General stress protein YciG, contains tandem KGG domains [General function prediction only]
Nucleotide Protein
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