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ycaI metallo-beta-lactamase superfamily inner membrane protein YcaI [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945531, updated on 4-Apr-2024

Summary

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Gene symbol
ycaI
Gene description
metallo-beta-lactamase superfamily inner membrane protein YcaI
Primary source
ASAP:ABE-0003111
Locus tag
b0913
See related
ECOCYC:EG12375
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0904
Summary
ycaI is predicted to have a CRP-S promoter co-regulated by both Crp and Sxy (Cameron, 2006). [More information is available at EcoGene: EG12375]. ycaI is not required for spontaneous plasmid transformation on nutrient plates with high agar concentration . [More information is available at EcoCyc: EG12375].
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Genomic context

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Sequence:
NC_000913.3 (964320..966584)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene 30S ribosomal subunit protein S1 Neighboring gene integration host factor subunit beta Neighboring gene ATP-binding lipopolysaccharide transport protein Neighboring gene tetraacyldisaccharide 4'-kinase Neighboring gene interstrand DNA crosslink repair glycosylase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The essential Escherichia coli msbA gene, a multicopy suppressor of null mutations in the htrB gene, is related to the universally conserved family of ATP-dependent translocators. Karow M, et al. Mol Microbiol, 1993 Jan. PMID 8094880
  2. Transforming DNA uptake gene orthologs do not mediate spontaneous plasmid transformation in Escherichia coli. Sun D, et al. J Bacteriol, 2009 Feb. PMID 19011021, Free PMC Article
  3. Non-canonical CRP sites control competence regulons in Escherichia coli and many other gamma-proteobacteria. Cameron AD, et al. Nucleic Acids Res, 2006. PMID 17068078, Free PMC Article
  4. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996
  5. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
involved_in establishment of competence for transformation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
metallo-beta-lactamase superfamily inner membrane protein YcaI

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    964320..966584
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415433.4 metallo-beta-lactamase superfamily inner membrane protein YcaI [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415433.4

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8S7EAC0
    Conserved Domains (1) summary
    PRK11539
    Location:1 → 753
    PRK11539; ComEC family competence protein; Provisional
Nucleotide Protein
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