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LOC9266960 60S ribosomal protein L44 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9266960, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9266960
Gene description
60S ribosomal protein L44
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 203.9), milk grains (RPKM 127.4) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 7
Exon count:
4
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (20267764..20269436)

Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R66 Neighboring gene ribosomal protein eL42 pseudogene Neighboring gene 60S ribosomal protein L44 Neighboring gene small nucleolar RNA R66 Neighboring gene small nucleolar RNA R66 Neighboring gene uncharacterized LOC112939623 Neighboring gene 60S ribosomal protein L44 Neighboring gene small nucleolar RNA R66 Neighboring gene glucose-6-phosphate/phosphate translocator 2, chloroplastic

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
60S ribosomal protein L44

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

    Range
    20267764..20269436
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015790624.2 → XP_015646110.1  60S ribosomal protein L44

    UniProtKB/TrEMBL
    A0A0P0X6W4, A6N0K7, Q0D5Z2, Q0D6R2, Q8H5N0
    Conserved Domains (1) summary
    PTZ00157
    Location:1 → 86
    PTZ00157; 60S ribosomal protein L36a; Provisional
Nucleotide Protein
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