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SEH1H Transducin/WD40 repeat-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842741, updated on 7-Sep-2023

Summary

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Gene symbol
SEH1H
Gene description
Transducin/WD40 repeat-like superfamily protein
Primary source
Araport:AT1G64350
Locus tag
AT1G64350
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F15H21.21
Summary
seh1-like protein
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Genomic context

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Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (23881512..23883354)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene myosin heavy chain-like protein Neighboring gene Serine/Threonine-kinase Neighboring gene 1-acyl-sn-glycerol-3-phosphate acyltransferase Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_105109.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in nuclear envelope IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Transducin/WD40 repeat-like superfamily protein
NP_564830.1
  • SEH1H; FUNCTIONS IN: nucleotide binding; LOCATED IN: chloroplast, heterotrimeric G-protein complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT2G30050.1); Has 1315 Blast hits to 1213 proteins in 251 species: Archae - 0; Bacteria - 230; Metazoa - 335; Fungi - 407; Plants - 224; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    23881512..23883354
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105109.4 → NP_564830.1  Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564830.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LB12, Q93VR9, Q9C5X7, Q9C7V9
    UniProtKB/TrEMBL
    A0A178WA50, A0A5S9WS05
    Conserved Domains (2) summary
    sd00039
    Location:13 → 54
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:10 → 308
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q93VR9.1

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