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RXW8 GDSL-like lipase/acylhydrolase superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842218, updated on 15-Feb-2024

Summary

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Gene symbol
RXW8
Gene description
GDSL-like lipase/acylhydrolase superfamily protein
Primary source
Araport:AT1G58520
Locus tag
AT1G58520
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 1
Exon count:
12
Sequence:
Chromosome: 1; NC_003070.9 (21729913..21738808)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene RNA-binding protein 1 Neighboring gene GDSL-like lipase/acylhydrolase superfamily protein Neighboring gene miscRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A membrane protein/signaling protein interaction network for Arabidopsis version AMPv2. Lalonde S, et al. Front Physiol, 2010. PMID 21423366, Free PMC Article
  2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001333839.1
NM_001333840.1
NM_001333841.1
NM_001333842.1
NM_001333843.1
NM_148599.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables calcium-activated cation channel activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
GDSL-like lipase/acylhydrolase superfamily protein
NP_001319268.1
  • RXW8; FUNCTIONS IN: hydrolase activity, acting on ester bonds, lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864), Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: Early-responsive to dehydration stress protein (ERD4) (TAIR:AT1G10090.1); Has 4395 Blast hits to 4270 proteins in 234 species: Archae - 0; Bacteria - 14; Metazoa - 185; Fungi - 607; Plants - 3474; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).
NP_001319269.1
  • RXW8; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: Early-responsive to dehydration stress protein (ERD4) (TAIR:AT1G10090.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    21729913..21738808
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001333840.1 → NP_001319268.1  GDSL-like lipase/acylhydrolase superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IBD5, F4IBD7, Q8W3K1, Q9SM00
    UniProtKB/TrEMBL
    A0A097NUQ5, A0A654EJW2, A0A7G2DYN3
    Conserved Domains (2) summary
    COG5594
    Location:4 → 655
    COG5594; Uncharacterized integral membrane protein [Function unknown]
    pfam02714
    Location:355 → 619
    RSN1_7TM; Calcium-dependent channel, 7TM region, putative phosphate

  2. NM_001333841.1 → NP_001322290.1  GDSL-like lipase/acylhydrolase superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IBD5, F4IBD7, Q8W3K1, Q9SM00
    UniProtKB/TrEMBL
    A0A097NUQ5, A0A654EJW2, A0A7G2DYN3
    Conserved Domains (2) summary
    COG5594
    Location:4 → 655
    COG5594; Uncharacterized integral membrane protein [Function unknown]
    pfam02714
    Location:355 → 619
    RSN1_7TM; Calcium-dependent channel, 7TM region, putative phosphate

  3. NM_001333842.1 → NP_001322291.1  GDSL-like lipase/acylhydrolase superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W705, A0A1P8ATL6

  4. NM_001333839.1 → NP_001319269.1  GDSL-like lipase/acylhydrolase superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IBD5, F4IBD7, Q8W3K1, Q9SM00
    UniProtKB/TrEMBL
    A0A097NUQ5, A0A654EJW2, A0A7G2DYN3
    Conserved Domains (2) summary
    COG5594
    Location:4 → 655
    COG5594; Uncharacterized integral membrane protein [Function unknown]
    pfam02714
    Location:355 → 619
    RSN1_7TM; Calcium-dependent channel, 7TM region, putative phosphate

  5. NM_001333843.1 → NP_001322289.1  GDSL-like lipase/acylhydrolase superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IBD5, F4IBD7, Q8W3K1, Q9SM00
    UniProtKB/TrEMBL
    A0A097NUQ5, A0A654EJW2, A0A7G2DYN3
    Conserved Domains (2) summary
    COG5594
    Location:4 → 655
    COG5594; Uncharacterized integral membrane protein [Function unknown]
    pfam02714
    Location:355 → 619
    RSN1_7TM; Calcium-dependent channel, 7TM region, putative phosphate

  6. NM_148599.4 → NP_683440.2  GDSL-like lipase/acylhydrolase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_683440.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IBD5, F4IBD7, Q8W3K1, Q9SM00
    UniProtKB/TrEMBL
    A0A097NUQ5, A0A654EJW2, A0A7G2DYN3
    Conserved Domains (2) summary
    COG5594
    Location:4 → 655
    COG5594; Uncharacterized integral membrane protein [Function unknown]
    pfam02714
    Location:355 → 619
    RSN1_7TM; Calcium-dependent channel, 7TM region, putative phosphate
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4IBD7.1

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