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TRFL5 TRF-like 5 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838141, updated on 15-Feb-2024

Summary

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Gene symbol
TRFL5
Gene description
TRF-like 5
Primary source
Araport:AT1G15720
Locus tag
AT1G15720
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F7H2.6; F7H2_6; TRF-like 5
Summary
Arabidopsis thaliana myb family transcription factor (At1g15720)
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (5406025..5407486)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Inorganic H pyrophosphatase family protein Neighboring gene ncRNA Neighboring gene ATPase, F1 complex, gamma subunit protein Neighboring gene prephenate dehydrogenase family protein Neighboring gene ncRNA Neighboring gene Cobalamin biosynthesis CobW-like protein Neighboring gene ncRNA Neighboring gene Leucine-rich repeat family protein Neighboring gene Transducin family protein / WD-40 repeat family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
  2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  4. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_101440.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
TRF-like 5
NP_173024.1
  • TRF-like 5 (TRFL5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT5G58340.2); Has 513 Blast hits to 506 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 41; Plants - 402; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    5406025..5407486
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101440.3 → NP_173024.1  TRF-like 5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173024.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W6H7, Q9LMR2
    Conserved Domains (1) summary
    cd11660
    Location:339 → 387
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
Nucleotide Protein
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