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XTH28 xyloglucan endotransglucosylase/hydrolase 28 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838037, updated on 7-Sep-2023

Summary

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Gene symbol
XTH28
Gene description
xyloglucan endotransglucosylase/hydrolase 28
Primary source
Araport:AT1G14720
Locus tag
AT1G14720
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATXTH28; ENDOXYLOGLUCAN TRANSFERASE A2; EXGT-A2; F10B6.12; F10B6_12; XTR2; xyloglucan endotransglucosylase/hydrolase 28; xyloglucan endotransglycosylase related 2; XYLOGLUCAN ENDOTRANSGLYCOSYLASE-RELATED PROTEIN
Summary
member of Glycoside Hydrolase Family 16
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Genomic context

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See XTH28 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (5066525..5068677, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene purple acid phosphatase 3 Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene Cytochrome b561/ferric reductase transmembrane protein family Neighboring gene class I heat shock protein, putative (DUF1423)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The AtXTH28 gene, a xyloglucan endotransglucosylase/hydrolase, is involved in automatic self-pollination in Arabidopsis thaliana. Kurasawa K, et al. Plant Cell Physiol, 2009 Feb. PMID 19139039, Free PMC Article
  2. Expression of endoxyloglucan transferase genes in acaulis mutants of Arabidopsis. Akamatsu T, et al. Plant Physiol, 1999 Nov. PMID 10557219, Free PMC Article
  3. 14-3-3 proteins fine-tune plant nutrient metabolism. Shin R, et al. FEBS Lett, 2011 Jan 3. PMID 21094157
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A defect in AtXTH28 led to a decrease in capability for self-pollination, probably due to inhibition of stamen filament growth.
    Title: The AtXTH28 gene, a xyloglucan endotransglucosylase/hydrolase, is involved in automatic self-pollination in Arabidopsis thaliana.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_101341.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
  
enables polysaccharide binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables xyloglucan:xyloglucosyl transferase activity IEA
Inferred from Electronic Annotation
more info
  
enables xyloglucan:xyloglucosyl transferase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within fruit development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within stamen filament development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
xyloglucan endotransglucosylase/hydrolase 28
NP_172925.1
  • xyloglucan endotransglucosylase/hydrolase 28 (XTH28); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: fruit development, stamen filament development; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: endoxyloglucan transferase A3 (TAIR:AT2G01850.1); Has 2041 Blast hits to 2031 proteins in 289 species: Archae - 0; Bacteria - 238; Metazoa - 0; Fungi - 395; Plants - 1341; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    5066525..5068677 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101341.4 → NP_172925.1  xyloglucan endotransglucosylase/hydrolase 28 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172925.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O04750, Q38909
    UniProtKB/TrEMBL
    A0A178W9E1, A0A5S9UHP0
    Conserved Domains (1) summary
    cd02176
    Location:29 → 290
    GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q38909.1

Gene LinkOut

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