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ATIM timeless family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835368, updated on 7-Sep-2023

Summary

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Gene symbol
ATIM
Gene description
timeless family protein
Primary source
Araport:AT5G52910
Locus tag
AT5G52910
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MXC20.14; MXC20_14; TIMELESS
Summary
homolog of Drosophila timeless
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Genomic context

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Location:
chromosome: 5
Exon count:
17
Sequence:
Chromosome: 5; NC_003076.8 (21457534..21463327, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene membrane-associated kinase regulator Neighboring gene plastidic pyruvate kinase beta subunit 1 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_124669.3

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
acts_upstream_of_or_within regulation of circadian rhythm NAS
Non-traceable Author Statement
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in nucleus NAS
Non-traceable Author Statement
more info
  

General protein information

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Preferred Names
timeless family protein
NP_200103.1
  • TIMELESS (ATIM); CONTAINS InterPro DOMAIN/s: Timeless C-terminal (InterPro:IPR007725), Timeless protein (InterPro:IPR006906); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    21457534..21463327 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001345015.1 → NP_001330129.1  timeless family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UQ59, A0A1P8B9S9

  2. NM_124669.3 → NP_200103.1  timeless family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200103.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654GAY2, Q9FLX0
    Conserved Domains (2) summary
    pfam05029
    Location:688 → 1139
    TIMELESS_C; Timeless protein C terminal region
    pfam04821
    Location:39 → 297
    TIMELESS; Timeless protein
Nucleotide Protein
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