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FZR3 FIZZY-related 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831230, updated on 15-Oct-2023

Summary

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Gene symbol
FZR3
Gene description
FIZZY-related 3
Primary source
Araport:AT5G13840
Locus tag
AT5G13840
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
CCS52B; cell cycle switch protein 52 B; FIZZY-related 3; MAC12.21; MAC12_21
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Genomic context

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Location:
chromosome: 5
Exon count:
8
Sequence:
Chromosome: 5; NC_003076.8 (4468508..4471466, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene FtsJ-like methyltransferase family protein Neighboring gene ncRNA Neighboring gene tRNA-Lys Neighboring gene ncRNA Neighboring gene nascent polypeptide-associated complex subunit alpha-like protein 3 Neighboring gene ELCH-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An insight into critical endocycle genes for plant-parasitic nematode feeding sites establishment. Vieira P, et al. Plant Signal Behav, 2013 Jun. PMID 23518580, Free PMC Article
  2. CCS52 and DEL1 genes are key components of the endocycle in nematode-induced feeding sites. de Almeida Engler J, et al. Plant J, 2012 Oct. PMID 22640471
  3. OSD1 promotes meiotic progression via APC/C inhibition and forms a regulatory network with TDM and CYCA1;2/TAM. Cromer L, et al. PLoS Genet, 2012. PMID 22844260, Free PMC Article
  4. GIGAS CELL1, a novel negative regulator of the anaphase-promoting complex/cyclosome, is required for proper mitotic progression and cell fate determination in Arabidopsis. Iwata E, et al. Plant Cell, 2011 Dec. PMID 22167058, Free PMC Article
  5. Specialization of CDC27 function in the Arabidopsis thaliana anaphase-promoting complex (APC/C). Pérez-Pérez JM, et al. Plant J, 2008 Jan. PMID 17944809

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001203376.1
NM_121387.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables anaphase-promoting complex binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables ubiquitin-protein transferase activator activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
FIZZY-related 3
NP_001190305.1
  • FIZZY-related 3 (FZR3); FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: chloroplast, heterotrimeric G-protein complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: FIZZY-related 2 (TAIR:AT4G22910.1).
NP_196888.2
  • FIZZY-related 3 (FZR3); FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: chloroplast, heterotrimeric G-protein complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: FIZZY-related 2 (TAIR:AT4G22910.1); Has 48305 Blast hits to 24690 proteins in 714 species: Archae - 60; Bacteria - 7363; Metazoa - 18902; Fungi - 10741; Plants - 5341; Viruses - 0; Other Eukaryotes - 5898 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    4468508..4471466 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001203376.1 → NP_001190305.1  FIZZY-related 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190305.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LPL5, Q9FFY8
    UniProtKB/TrEMBL
    A0A178UQT9, A0A5S9Y476
    Conserved Domains (3) summary
    COG2319
    Location:176 → 462
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:197 → 456
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:218 → 253
    7WD40; WD40 repeat [structural motif]

  2. NM_121387.4 → NP_196888.2  FIZZY-related 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196888.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LPL5, Q9FFY8
    UniProtKB/TrEMBL
    A0A178UQT9, A0A5S9Y476
    Conserved Domains (3) summary
    COG2319
    Location:176 → 462
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:197 → 456
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:218 → 253
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8LPL5.1

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