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ARF16 auxin response factor 16 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829131, updated on 7-Sep-2023

Summary

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Gene symbol
ARF16
Gene description
auxin response factor 16
Primary source
Araport:AT4G30080
Locus tag
AT4G30080
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
auxin response factor 16; F6G3.110; F6G3_110
Summary
Involved in root cap cell differentiation. Gene expression is regulated by mir160.Located in the nucleus.
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Genomic context

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Location:
chromosome: 4
Exon count:
4
Sequence:
Chromosome: 4; NC_003075.7 (14703065..14706354, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene low-molecular-weight cysteine-rich 19 Neighboring gene golgin family A protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Hormone synergy: Auxin and jasmonate boost abscisic acid signaling via ARF10 and ARF16. Bascom C. Plant Cell, 2023 Mar 15. PMID 36651138, Free PMC Article
  2. Auxin controls seed dormancy through stimulation of abscisic acid signaling by inducing ARF-mediated ABI3 activation in Arabidopsis. Liu X, et al. Proc Natl Acad Sci U S A, 2013 Sep 17. PMID 23986496, Free PMC Article
  3. Control of root cap formation by MicroRNA-targeted auxin response factors in Arabidopsis. Wang JW, et al. Plant Cell, 2005 Aug. PMID 16006581, Free PMC Article
  4. MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression of early auxin response genes. Mallory AC, et al. Plant Cell, 2005 May. PMID 15829600, Free PMC Article
  5. Phenotypic plasticity of adventitious rooting in Arabidopsis is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts and microRNA abundance. Gutierrez L, et al. Plant Cell, 2009 Oct. PMID 19820192, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Hormone synergy: Auxin and jasmonate boost abscisic acid signaling via ARF10 and ARF16.
    Title: Hormone synergy: Auxin and jasmonate boost abscisic acid signaling via ARF10 and ARF16.
  2. Auxin recruits AUXIN RESPONSE FACTOR 10 and AUXIN RESPONSE FACTOR 16 to control the expression of ABI3 during seed germination.
    Title: Auxin controls seed dormancy through stimulation of abscisic acid signaling by inducing ARF-mediated ABI3 activation in Arabidopsis.
  3. Phenotypic plasticity of adventitious rooting is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts and microRNA abundance. Repressor/Activator Balance Is Unaltered by Disruptions to ARF10 and ARF16.
    Title: Phenotypic plasticity of adventitious rooting in Arabidopsis is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts and microRNA abundance.
  4. ARF10 and ARF16 control root cap formation in root. Auxin and micro RNA 160(miR160) regulate the expression of ARF10 and ARF16 genes independently. [ARF16]
    Title: Control of root cap formation by MicroRNA-targeted auxin response factors in Arabidopsis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_119154.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables miRNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cell division IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within pattern specification process IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within response to auxin IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within root cap development IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within root cap development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
auxin response factor 16
NP_567841.1
  • auxin response factor 16 (ARF16); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 10 (TAIR:AT2G28350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    14703065..14706354 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119154.5 → NP_567841.1  auxin response factor 16 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567841.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B2CTE3, B2CTE4, Q93YR9, Q9SZW1
    UniProtKB/TrEMBL
    A0A5S9XX90
    Conserved Domains (2) summary
    pfam02362
    Location:120 → 221
    B3; B3 DNA binding domain
    pfam06507
    Location:279 → 362
    Auxin_resp; Auxin response factor
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q93YR9.1

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