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RIK RS2-interacting KH protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822600, updated on 15-Feb-2024

Summary

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Gene symbol
RIK
Gene description
RS2-interacting KH protein
Primary source
Araport:AT3G29390
Locus tag
AT3G29390
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
RS2-interacting KH protein
Summary
Nuclear localized K-homology containing protein that interacts with AS1.
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Genomic context

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Location:
chromosome: 3
Exon count:
11
Sequence:
Chromosome: 3; NC_003074.8 (11289495..11294774)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Cyclin-like family protein Neighboring gene dentin sialophosphoprotein-like protein Neighboring gene exocyst subunit exo70 family protein E1 Neighboring gene Terpenoid cyclases/Protein prenyltransferases superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Maize rough sheath2 and its Arabidopsis orthologue ASYMMETRIC LEAVES1 interact with HIRA, a predicted histone chaperone, to maintain knox gene silencing and determinacy during organogenesis. Phelps-Durr TL, et al. Plant Cell, 2005 Nov. PMID 16243907, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
  3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_113865.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA binding TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in nucleus TAS
Traceable Author Statement
more info
 PubMed 

General protein information

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Preferred Names
RS2-interacting KH protein
NP_566850.3
  • RS2-interacting KH protein (RIK); FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; Has 9708 Blast hits to 6008 proteins in 528 species: Archae - 14; Bacteria - 833; Metazoa - 2799; Fungi - 1318; Plants - 2564; Viruses - 582; Other Eukaryotes - 1598 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    11289495..11294774
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001339023.1 → NP_001326115.1  RS2-interacting KH protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VKN8, A0A1I9LNA6

  2. NM_113865.4 → NP_566850.3  RS2-interacting KH protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566850.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q32SG0, Q8VZ97, Q9LIA4
    UniProtKB/TrEMBL
    A0A654FGX3
    Conserved Domains (1) summary
    cl00098
    Location:205 → 263
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LIA4.2

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