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CLE25 CLAVATA3/ESR-RELATED 25 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822475, updated on 7-Sep-2023

Summary

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Gene symbol
CLE25
Gene description
CLAVATA3/ESR-RELATED 25
Primary source
Araport:AT3G28455
Locus tag
AT3G28455
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
CLAVATA3/ESR-RELATED 25
Summary
Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can not replace CLV3 function in vivo.
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Genomic context

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See CLE25 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (10669725..10671645, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene CLEC16A-like protein Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene methyltransferase Neighboring gene Duplicated homeodomain-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A small peptide modulates stomatal control via abscisic acid in long-distance signalling. Takahashi F, et al. Nature, 2018 Apr. PMID 29618812
  2. CLAVATA2 forms a distinct CLE-binding receptor complex regulating Arabidopsis stem cell specification. Guo Y, et al. Plant J, 2010 Sep. PMID 20626648, Free PMC Article
  3. Perception of root-active CLE peptides requires CORYNE function in the phloem vasculature. Hazak O, et al. EMBO Rep, 2017 Aug. PMID 28607033, Free PMC Article
  4. A large family of genes that share homology with CLAVATA3. Cock JM, et al. Plant Physiol, 2001 Jul. PMID 11457943, Free PMC Article
  5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_148758.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables receptor serine/threonine kinase binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell signaling involved in cell fate commitment ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in maintenance of root meristem identity IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in phloem development IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within positive regulation of abscisic acid biosynthetic process IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within positive regulation of response to water deprivation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of cell differentiation IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast ISM
Inferred from Sequence Model
more info
 PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
CLAVATA3/ESR-RELATED 25
NP_683600.1
  • CLAVATA3/ESR-RELATED 25 (CLE25); Has 13 Blast hits to 13 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    10669725..10671645 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_148758.2 → NP_683600.1  CLAVATA3/ESR-RELATED 25 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_683600.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LFL4
    UniProtKB/TrEMBL
    A0A178VIA6, A0A5S9XGG6, A0A654FBG9
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8LFL4.1

Gene LinkOut

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Molecular Biology Databases