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GGPS4 geranylgeranyl pyrophosphate synthase 4 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816379, updated on 7-Sep-2023

Summary

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Gene symbol
GGPS4
Gene description
geranylgeranyl pyrophosphate synthase 4
Primary source
Araport:AT2G18640
Locus tag
AT2G18640
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F24H14.2; geranylgeranyl pyrophosphate synthase 4
Summary
Encodes an endoplasmic reticulum-targeted geranylgeranyl pyrophosphate synthase
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Genomic context

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Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (8083518..8084960, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Terpenoid synthases superfamily protein Neighboring gene transmembrane protein, putative (DUF677) Neighboring gene RING/U-box superfamily protein Neighboring gene plant natriuretic peptide A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cloning and functional expression of a novel geranylgeranyl pyrophosphate synthase gene from Arabidopsis thaliana in Escherichia coli. Zhu XF, et al. Plant Cell Physiol, 1997 Mar. PMID 9150607
  2. Five geranylgeranyl diphosphate synthases expressed in different organs are localized into three subcellular compartments in Arabidopsis. Okada K, et al. Plant Physiol, 2000 Apr. PMID 10759500, Free PMC Article
  3. Characterization of the GGPP synthase gene family in Arabidopsis thaliana. Beck G, et al. Plant Mol Biol, 2013 Jul. PMID 23729351
  4. 14-3-3 proteins fine-tune plant nutrient metabolism. Shin R, et al. FEBS Lett, 2011 Jan 3. PMID 21094157
  5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables dimethylallyltranstransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables farnesyltranstransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables farnesyltranstransferase activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
enables geranyltranstransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in farnesyl diphosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in geranyl diphosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in geranylgeranyl diphosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within isoprenoid biosynthetic process TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
geranylgeranyl pyrophosphate synthase 4
NP_179454.1
  • geranylgeranyl pyrophosphate synthase 4 (GGPS4); CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: geranylgeranyl pyrophosphate synthase 2 (TAIR:AT2G23800.1); Has 16777 Blast hits to 16770 proteins in 2973 species: Archae - 341; Bacteria - 9532; Metazoa - 310; Fungi - 469; Plants - 462; Viruses - 12; Other Eukaryotes - 5651 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    8083518..8084960 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127420.2 → NP_179454.1  geranylgeranyl pyrophosphate synthase 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179454.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q1PF45, Q39107, Q9SLG2
    UniProtKB/TrEMBL
    A0A5S9WZB4, A0A654EZ24, A0MEM8
    Conserved Domains (1) summary
    cd00685
    Location:108 → 370
    Trans_IPPS_HT; Trans-Isoprenyl Diphosphate Synthases, head-to-tail
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SLG2.1

Gene LinkOut

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