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si:dkey-211g8.4 si:dkey-211g8.4 [ Danio rerio (zebrafish) ]

Gene ID: 793729, updated on 11-Apr-2024

Summary

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Official Symbol
si:dkey-211g8.4provided by ZNC
Official Full Name
si:dkey-211g8.4provided by ZNC
Primary source
ZFIN:ZDB-GENE-060503-624
See related
Ensembl:ENSDARG00000094230 AllianceGenome:ZFIN:ZDB-GENE-060503-624
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable DNA binding activity. Predicted to be involved in chromosome condensation and chromosome segregation. Predicted to be active in nucleoplasm. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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Location:
chromosome: 19
Exon count:
2
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (10578495..10588019)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (10659571..10668990)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene lens intrinsic membrane protein 2.4 Neighboring gene upstream transcription factor 2, c-fos interacting Neighboring gene si:dkey-211g8.5 Neighboring gene si:dkey-211g8.8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in chromosome organization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in condensed chromosome IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
barrier-to-autointegration factor; uncharacterized protein LOC793729

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    10578495..10588019
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005159492.4 → XP_005159549.1  barrier-to-autointegration factor

    UniProtKB/TrEMBL
    A0A8M2B646, Q1L957
    Related
    ENSDARP00000118510.2, ENSDART00000131225.3
    Conserved Domains (1) summary
    pfam02961
    Location:1 → 86
    BAF; Barrier to autointegration factor
Nucleotide Protein Strain
Heading Accession and Version

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