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ribc1 RIB43A domain with coiled-coils 1 [ Danio rerio (zebrafish) ]

Gene ID: 791181, updated on 27-Mar-2024

Summary

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Official Symbol
ribc1provided by ZNC
Official Full Name
RIB43A domain with coiled-coils 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-081031-7
See related
Ensembl:ENSDARG00000055739 AllianceGenome:ZFIN:ZDB-GENE-081031-7
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
sb:eu690; zgc:158280; si:dkey-23g9.1
Summary
Orthologous to human RIBC1 (RIB43A domain with coiled-coils 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 23
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (28685237..28692581, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (28758619..28766040, complement)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 Neighboring gene microRNA let7h Neighboring gene L1 cell adhesion molecule, paralog a Neighboring gene structural maintenance of chromosomes 1A Neighboring gene spermidine synthase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Spermidine, but not spermine, is essential for pigment pattern formation in zebrafish. Frohnhöfer HG, et al. Biol Open, 2016 Jun 15. PMID 27215328, Free PMC Article
  2. Variable phenotypes and penetrance between and within different zebrafish ciliary transition zone mutants. Wang J, et al. Dis Model Mech, 2022 Dec 1. PMID 36533556, Free PMC Article
  3. Analysis of DNA methylation reveals a partial reprogramming of the Müller glia genome during retina regeneration. Powell C, et al. Proc Natl Acad Sci U S A, 2013 Dec 3. PMID 24248357, Free PMC Article
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
RIB43A-like with coiled-coils protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080663.2 → NP_001074132.2  RIB43A-like with coiled-coils protein 1

    Status: VALIDATED

    Source sequence(s)
    CR354431
    UniProtKB/TrEMBL
    A0A8M1ND12, F1R3H7
    Related
    ENSDARP00000072603.5, ENSDART00000078141.6
    Conserved Domains (1) summary
    pfam05914
    Location:4 → 381
    RIB43A; RIB43A

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    28685237..28692581 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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