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4930444P10Rik RIKEN cDNA 4930444P10 gene [ Mus musculus (house mouse) ]

Gene ID: 75799, updated on 5-Mar-2024

Summary

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Official Symbol
4930444P10Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930444P10 geneprovided by MGI
Primary source
MGI:MGI:1923049
See related
Ensembl:ENSMUSG00000067795 AllianceGenome:MGI:1923049
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human C8orf89 (chromosome 8 open reading frame 89). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 15.0) and CNS E18 (RPKM 0.7) See more
Orthologs
human all
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Genomic context

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Location:
1 A3; 1 4.94 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (16136198..16163549, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (16065974..16093345, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_00332 Neighboring gene predicted gene, 31523 Neighboring gene STARR-seq mESC enhancer starr_00334 Neighboring gene STARR-seq mESC enhancer starr_00335 Neighboring gene predicted gene 7634 Neighboring gene STARR-seq mESC enhancer starr_00336 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:16094431-16094614 Neighboring gene ribosomal protein L7 Neighboring gene retinol dehydrogenase 10 (all-trans)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
putative uncharacterized protein C8orf89 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001243238.2 → NP_001230167.1  putative uncharacterized protein C8orf89 homolog

    See identical proteins and their annotated locations for NP_001230167.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    AK015384, BB020198, BU582852
    Consensus CDS
    CCDS56622.1
    UniProtKB/TrEMBL
    D3YUR1, F6QJK4, J3QPK3
    Related
    ENSMUSP00000119257.3, ENSMUST00000151004.2
    Conserved Domains (1) summary
    pfam17690
    Location:1 → 153
    DUF5537; Family of unknown function (DUF5537)

  2. NM_001305227.1 → NP_001292156.1  putative uncharacterized protein C8orf89 homolog

    See identical proteins and their annotated locations for NP_001292156.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC162442, AK015384
    Consensus CDS
    CCDS56622.1
    UniProtKB/TrEMBL
    D3YUR1, F6QJK4, J3QPK3
    Related
    ENSMUSP00000137853.2, ENSMUST00000145070.8
    Conserved Domains (1) summary
    pfam17690
    Location:1 → 153
    DUF5537; Family of unknown function (DUF5537)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    16136198..16163549 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006495584.5 → XP_006495647.1  putative uncharacterized protein C8orf89 homolog isoform X3

    Conserved Domains (1) summary
    pfam17690
    Location:1 → 99
    DUF5537; Family of unknown function (DUF5537)

  2. XM_030243351.2 → XP_030099211.1  putative uncharacterized protein C8orf89 homolog isoform X2

    UniProtKB/TrEMBL
    D3YUR1, F6QJK4, J3QPK3
    Conserved Domains (1) summary
    pfam17690
    Location:1 → 153
    DUF5537; Family of unknown function (DUF5537)

  3. XM_030243353.1 → XP_030099213.1  putative uncharacterized protein C8orf89 homolog isoform X2

    UniProtKB/TrEMBL
    D3YUR1, F6QJK4, J3QPK3
    Conserved Domains (1) summary
    pfam17690
    Location:1 → 153
    DUF5537; Family of unknown function (DUF5537)

  4. XM_006495582.2 → XP_006495645.1  putative uncharacterized protein C8orf89 homolog isoform X1

    Conserved Domains (1) summary
    pfam17690
    Location:19 → 171
    DUF5537; Family of unknown function (DUF5537)
Nucleotide Protein Strain
Heading Accession and Version

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