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SETMAR SET domain and mariner transposase fusion gene [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 703880, updated on 5-Mar-2024

Summary

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Official Symbol
SETMARprovided by VGNC
Official Full Name
SET domain and mariner transposase fusion geneprovided by VGNC
Primary source
VGNC:VGNC:84083
See related
Ensembl:ENSMMUG00000017828
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (135606096..135620184)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (62276229..62293893, complement)

Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat neuronal 1 Neighboring gene polyribonucleotide nucleotidyltransferase 1, mitochondrial pseudogene Neighboring gene sulfatase modifying factor 1 Neighboring gene U7 small nuclear RNA Neighboring gene inositol 1,4,5-trisphosphate receptor type 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone-lysine N-methyltransferase SETMAR
XP_001099426.2
XP_028700220.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041755.1 Reference Mmul_10 Primary Assembly

    Range
    135606096..135620184
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001099426.4 → XP_001099426.2  histone-lysine N-methyltransferase SETMAR isoform X2

    UniProtKB/TrEMBL
    F7DVN6, I0FL49
    Related
    ENSMMUP00000023438.3, ENSMMUT00000025053.4
    Conserved Domains (4) summary
    smart00317
    Location:139 → 268
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    pfam01359
    Location:502 → 581
    Transposase_1; Transposase (partial DDE domain)
    pfam13565
    Location:385 → 447
    HTH_32; Homeodomain-like domain
    cl02622
    Location:27 → 123
    Pre-SET; Pre-SET motif

  2. XM_028844387.1 → XP_028700220.1  histone-lysine N-methyltransferase SETMAR isoform X1

    UniProtKB/TrEMBL
    I0FL49
    Conserved Domains (4) summary
    smart00317
    Location:153 → 282
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    pfam01359
    Location:515 → 594
    Transposase_1; Transposase (partial DDE domain)
    pfam13565
    Location:399 → 461
    HTH_32; Homeodomain-like domain
    cl02622
    Location:66 → 137
    Pre-SET; Pre-SET motif
Nucleotide Protein
Heading Accession and Version

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