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SETD4 SET domain containing 4 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 696003, updated on 5-Mar-2024

Summary

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Official Symbol
SETD4provided by VGNC
Official Full Name
SET domain containing 4provided by VGNC
Primary source
VGNC:VGNC:77224
Locus tag
EGK_13266
See related
Ensembl:ENSMMUG00000001125
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See SETD4 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
12
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (10522551..10548348)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (10653544..10678731)

Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC106997252 Neighboring gene carbonyl reductase 1 Neighboring gene uncharacterized LOC106997253 Neighboring gene protein phosphatase inhibitor 2 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H3K36 methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K4 methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-lysine dimethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptidyl-lysine monomethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptidyl-lysine trimethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SET domain-containing protein 4
NP_001253203.1
XP_014988374.2
XP_014988375.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001266274.1 → NP_001253203.1  SET domain-containing protein 4

    See identical proteins and their annotated locations for NP_001253203.1

    Status: PROVISIONAL

    Source sequence(s)
    JV636226
    UniProtKB/TrEMBL
    A0A8J8XZC5, F6T9W4, G7MMT8, I2CX81
    Related
    ENSMMUP00000071733.1, ENSMMUT00000109134.1
    Conserved Domains (2) summary
    cd19177
    Location:46 → 287
    SET_SETD4; SET domain found in SET domain-containing protein 4 (SETD4) and similar proteins
    pfam09273
    Location:314 → 425
    Rubis-subs-bind; Rubisco LSMT substrate-binding

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041756.1 Reference Mmul_10 Primary Assembly

    Range
    10522551..10548348
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015132888.2 → XP_014988374.2  SET domain-containing protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A5F7ZRQ2
    Related
    ENSMMUP00000068305.1, ENSMMUT00000098776.1
    Conserved Domains (1) summary
    pfam09273
    Location:446 → 557
    Rubis-subs-bind; Rubisco LSMT substrate-binding

  2. XM_015132889.2 → XP_014988375.2  SET domain-containing protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A5F8A1F6, F6T9W4
    Conserved Domains (1) summary
    pfam09273
    Location:314 → 425
    Rubis-subs-bind; Rubisco LSMT substrate-binding
Nucleotide Protein
Heading Accession and Version

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