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LOC6554646 protein serrate [ Drosophila erecta ]

Gene ID: 6554646, updated on 21-Dec-2023

Summary

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Gene symbol
LOC6554646
Gene description
protein serrate
Locus tag
Dere_GG12134
See related
EnsemblRapid:LOC6554646
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila erecta
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GG12134; GG12134-PA
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
101 current DereRS2 (GCF_003286155.1) Unplaced Scaffold NW_020825194.1 (5187504..5209485)

NW_020825194.1Genomic Context describing neighboring genes Neighboring gene uridine diphosphate glucose pyrophosphatase Neighboring gene uridine diphosphate glucose pyrophosphatase Neighboring gene DNA repair protein RAD51 homolog 3 Neighboring gene serine palmitoyltransferase small subunit B Neighboring gene degenerin del-1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020825194 Unplaced Scaffold Reference DereRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Notch binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell communication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in establishment or maintenance of epithelial cell apical/basal polarity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of protein-containing complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein serrate
Names
Dere\GG12134
Dere\GG12134-PA
dere_GLEANR_12181

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila erecta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DereRS2

Genomic

  1. NW_020825194.1 Reference DereRS2

    Range
    5187504..5209485
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001981541.3 → XP_001981577.1  protein serrate

    See identical proteins and their annotated locations for XP_001981577.1

    UniProtKB/TrEMBL
    B3P843
    Related
    XP_001981577.1, XM_001981541.3
    Conserved Domains (4) summary
    smart00215
    Location:993 → 1053
    VWC_out; von Willebrand factor (vWF) type C domain
    cd00054
    Location:490 → 526
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam01414
    Location:220 → 282
    DSL; Delta serrate ligand
    pfam07657
    Location:83 → 161
    MNNL; N terminus of Notch ligand
Nucleotide Protein
Heading Accession and Version

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