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GTF2A1 general transcription factor IIA subunit 1 [ Canis lupus familiaris (dog) ]

Gene ID: 613006, updated on 5-Mar-2024

Summary

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Official Symbol
GTF2A1provided by VGNC
Official Full Name
general transcription factor IIA subunit 1provided by VGNC
Primary source
VGNC:VGNC:41541
See related
Ensembl:ENSCAFG00845009095
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
10
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 8 NC_051812.1 (53750721..53797167, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 8 NC_006590.4 (53078908..53125623, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 8 NC_049229.1 (53828585..53875047, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 8 NC_049268.1 (53432356..53478683, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 8 NC_049749.1 (53436154..53482553, complement)

Chromosome 8 - NC_051812.1Genomic Context describing neighboring genes Neighboring gene centrosomal protein 128 Neighboring gene uncharacterized LOC111097123 Neighboring gene thyroid stimulating hormone receptor Neighboring gene uncharacterized LOC111097124 Neighboring gene small nucleolar RNA SNORA79 Neighboring gene stonin 2 Neighboring gene uncharacterized LOC102153608 Neighboring gene uncharacterized LOC102153667

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIIA complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation factor IIA subunit 1; LOW QUALITY PROTEIN: transcription initiation factor IIA subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051812.1 Reference ROS_Cfam_1.0

    Range
    53750721..53797167 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038674396.1 → XP_038530324.1  transcription initiation factor IIA subunit 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0M468, A0A8C0PQL8, A0A8C0R369, A0A8I3N1D1
    Related
    ENSCAFP00845012486.1, ENSCAFT00845016058.1
    Conserved Domains (1) summary
    pfam03153
    Location:13 → 376
    TFIIA; Transcription factor IIA, alpha/beta subunit

  2. XM_038674397.1 → XP_038530325.1  transcription initiation factor IIA subunit 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0PQL8
    Conserved Domains (1) summary
    pfam03153
    Location:1 → 337
    TFIIA; Transcription factor IIA, alpha/beta subunit

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049268.1 Alternate UMICH_Zoey_3.1

    Range
    53432356..53478683 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038483988.1 → XP_038339916.1  LOW QUALITY PROTEIN: transcription initiation factor IIA subunit 1 isoform X1

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049749.1 Alternate UNSW_CanFamBas_1.0

    Range
    53436154..53482553 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038609575.1 → XP_038465503.1  transcription initiation factor IIA subunit 1 isoform X1

    Conserved Domains (1) summary
    pfam03153
    Location:13 → 376
    TFIIA; Transcription factor IIA, alpha/beta subunit

  2. XM_038609576.1 → XP_038465504.1  transcription initiation factor IIA subunit 1 isoform X2

    Conserved Domains (1) summary
    pfam03153
    Location:1 → 337
    TFIIA; Transcription factor IIA, alpha/beta subunit

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049229.1 Alternate UU_Cfam_GSD_1.0

    Range
    53828585..53875047 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038545483.1 → XP_038401411.1  transcription initiation factor IIA subunit 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0M468, A0A8C0PQL8, A0A8C0R369, A0A8I3N1D1
    Conserved Domains (1) summary
    pfam03153
    Location:13 → 376
    TFIIA; Transcription factor IIA, alpha/beta subunit

  2. XM_038545484.1 → XP_038401412.1  transcription initiation factor IIA subunit 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0PQL8
    Conserved Domains (1) summary
    pfam03153
    Location:1 → 337
    TFIIA; Transcription factor IIA, alpha/beta subunit

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006590.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    53078908..53125623 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038593200.1 → XP_038449128.1  transcription initiation factor IIA subunit 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0M468, A0A8C0PQL8, A0A8C0R369, A0A8I3N1D1
    Conserved Domains (1) summary
    pfam03153
    Location:13 → 376
    TFIIA; Transcription factor IIA, alpha/beta subunit

  2. XM_038593211.1 → XP_038449139.1  transcription initiation factor IIA subunit 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0PQL8
    Conserved Domains (1) summary
    pfam03153
    Location:1 → 337
    TFIIA; Transcription factor IIA, alpha/beta subunit
Nucleotide Protein
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