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CHRD chordin [ Canis lupus familiaris (dog) ]

Gene ID: 607289, updated on 5-Mar-2024

Summary

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Official Symbol
CHRDprovided by VGNC
Official Full Name
chordinprovided by VGNC
Primary source
VGNC:VGNC:39228
See related
Ensembl:ENSCAFG00845028614
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 34
Exon count:
24
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 34 NC_051838.1 (17163252..17172231)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 34 NC_006616.4 (21341312..21350291)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 34 NC_049255.1 (17425160..17434173)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 34 NC_049294.1 (17200125..17209104)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 34 NC_049775.1 (17196194..17205174)

Chromosome 34 - NC_051838.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 131 member A Neighboring gene chloride voltage-gated channel 2 Neighboring gene RNA polymerase II, I and III subunit H Neighboring gene thrombopoietin Neighboring gene uncharacterized LOC111093864 Neighboring gene galectin-related protein-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chordin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051838.1 Reference ROS_Cfam_1.0

    Range
    17163252..17172231
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038445745.1 → XP_038301673.1  chordin isoform X1

    UniProtKB/TrEMBL
    A0A8C0MSV0, A0A8C0TSR7, A0A8I3PXR5, A0A8P0NET3
    Related
    ENSCAFP00845039939.1, ENSCAFT00845050947.1
    Conserved Domains (3) summary
    smart00214
    Location:789 → 855
    VWC; von Willebrand factor (vWF) type C domain
    smart00754
    Location:532 → 646
    CHRD; A domain in the BMP inhibitor chordin and in microbial proteins
    cl17735
    Location:51 → 125
    VWC; von Willebrand factor type C domain

  2. XM_038445746.1 → XP_038301674.1  chordin isoform X2

    UniProtKB/TrEMBL
    A0A8C0JQ71
    Conserved Domains (3) summary
    smart00214
    Location:716 → 782
    VWC; von Willebrand factor (vWF) type C domain
    smart00754
    Location:459 → 573
    CHRD; A domain in the BMP inhibitor chordin and in microbial proteins
    cl17735
    Location:637 → 694
    VWC; von Willebrand factor type C domain

  3. XM_038445747.1 → XP_038301675.1  chordin isoform X3

    UniProtKB/TrEMBL
    A0A8C0JQ71
    Conserved Domains (3) summary
    smart00214
    Location:716 → 782
    VWC; von Willebrand factor (vWF) type C domain
    smart00754
    Location:459 → 573
    CHRD; A domain in the BMP inhibitor chordin and in microbial proteins
    cl17735
    Location:637 → 694
    VWC; von Willebrand factor type C domain

  4. XM_038445748.1 → XP_038301676.1  chordin isoform X4

    Conserved Domains (3) summary
    smart00214
    Location:493 → 559
    VWC; von Willebrand factor (vWF) type C domain
    smart00754
    Location:236 → 350
    CHRD; A domain in the BMP inhibitor chordin and in microbial proteins
    cl17735
    Location:414 → 471
    VWC; von Willebrand factor type C domain

RNA

  1. XR_005306837.1 RNA Sequence

  2. XR_005306838.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049294.1 Alternate UMICH_Zoey_3.1

    Range
    17200125..17209104
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038519936.1 → XP_038375864.1  chordin isoform X1

    Conserved Domains (3) summary
    smart00214
    Location:789 → 855
    VWC; von Willebrand factor (vWF) type C domain
    smart00754
    Location:532 → 646
    CHRD; A domain in the BMP inhibitor chordin and in microbial proteins
    cl17735
    Location:51 → 125
    VWC; von Willebrand factor type C domain

  2. XM_038519937.1 → XP_038375865.1  chordin isoform X2

    Conserved Domains (3) summary
    smart00214
    Location:716 → 782
    VWC; von Willebrand factor (vWF) type C domain
    smart00754
    Location:459 → 573
    CHRD; A domain in the BMP inhibitor chordin and in microbial proteins
    cl17735
    Location:637 → 694
    VWC; von Willebrand factor type C domain

  3. XM_038519938.1 → XP_038375866.1  chordin isoform X3

    Conserved Domains (3) summary
    smart00214
    Location:716 → 782
    VWC; von Willebrand factor (vWF) type C domain
    smart00754
    Location:459 → 573
    CHRD; A domain in the BMP inhibitor chordin and in microbial proteins
    cl17735
    Location:637 → 694
    VWC; von Willebrand factor type C domain

  4. XM_038519939.1 → XP_038375867.1  chordin isoform X4

    Conserved Domains (3) summary
    smart00214
    Location:493 → 559
    VWC; von Willebrand factor (vWF) type C domain
    smart00754
    Location:236 → 350
    CHRD; A domain in the BMP inhibitor chordin and in microbial proteins
    cl17735
    Location:414 → 471
    VWC; von Willebrand factor type C domain

RNA

  1. XR_005349803.1 RNA Sequence

  2. XR_005349804.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049775.1 Alternate UNSW_CanFamBas_1.0

    Range
    17196194..17205174
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038647978.1 → XP_038503906.1  chordin isoform X1

  2. XM_038647979.1 → XP_038503907.1  chordin isoform X2

  3. XM_038647980.1 → XP_038503908.1  chordin isoform X3

  4. XM_038647981.1 → XP_038503909.1  chordin isoform X4

    Conserved Domains (3) summary
    smart00214
    Location:493 → 559
    VWC; von Willebrand factor (vWF) type C domain
    smart00754
    Location:236 → 350
    CHRD; A domain in the BMP inhibitor chordin and in microbial proteins
    cl17735
    Location:414 → 471
    VWC; von Willebrand factor type C domain

RNA

  1. XR_005417474.1 RNA Sequence

  2. XR_005417475.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049255.1 Alternate UU_Cfam_GSD_1.0

    Range
    17425160..17434173
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038583572.1 → XP_038439500.1  chordin isoform X1

    UniProtKB/TrEMBL
    A0A8C0TSR7, A0A8I3PXR5

  2. XM_038583573.1 → XP_038439501.1  chordin isoform X2

    UniProtKB/TrEMBL
    A0A8C0JQ71

  3. XM_038583574.1 → XP_038439502.1  chordin isoform X3

    UniProtKB/TrEMBL
    A0A8C0JQ71

  4. XM_038583575.1 → XP_038439503.1  chordin isoform X4

RNA

  1. XR_005383799.1 RNA Sequence

  2. XR_005383800.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006616.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    21341312..21350291
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_844683.4 → XP_849776.1  chordin isoform X1

    UniProtKB/TrEMBL
    A0A8C0MSV0, A0A8C0TSR7, A0A8I3PXR5, A0A8P0NET3
    Conserved Domains (3) summary
    smart00214
    Location:789 → 855
    VWC; von Willebrand factor (vWF) type C domain
    smart00754
    Location:532 → 646
    CHRD; A domain in the BMP inhibitor chordin and in microbial proteins
    cl17735
    Location:51 → 125
    VWC; von Willebrand factor type C domain

  2. XM_038462906.1 → XP_038318834.1  chordin isoform X2

    UniProtKB/TrEMBL
    A0A8C0JQ71
    Conserved Domains (3) summary
    smart00214
    Location:716 → 782
    VWC; von Willebrand factor (vWF) type C domain
    smart00754
    Location:459 → 573
    CHRD; A domain in the BMP inhibitor chordin and in microbial proteins
    cl17735
    Location:637 → 694
    VWC; von Willebrand factor type C domain

  3. XM_038462907.1 → XP_038318835.1  chordin isoform X3

    UniProtKB/TrEMBL
    A0A8C0JQ71
    Conserved Domains (3) summary
    smart00214
    Location:716 → 782
    VWC; von Willebrand factor (vWF) type C domain
    smart00754
    Location:459 → 573
    CHRD; A domain in the BMP inhibitor chordin and in microbial proteins
    cl17735
    Location:637 → 694
    VWC; von Willebrand factor type C domain

  4. XM_022414218.2 → XP_022269926.1  chordin isoform X4

    Conserved Domains (3) summary
    smart00214
    Location:493 → 559
    VWC; von Willebrand factor (vWF) type C domain
    smart00754
    Location:236 → 350
    CHRD; A domain in the BMP inhibitor chordin and in microbial proteins
    cl17735
    Location:414 → 471
    VWC; von Willebrand factor type C domain

RNA

  1. XR_005317664.1 RNA Sequence

  2. XR_005317665.1 RNA Sequence

Nucleotide Protein
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