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Sult1d1 sulfotransferase family 1D, member 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 60393, updated on 30-Mar-2024

Summary

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Official Symbol
Sult1d1provided by RGD
Official Full Name
sulfotransferase family 1D, member 1provided by RGD
Primary source
RGD:620491
See related
Ensembl:ENSRNOG00000001960 AllianceGenome:RGD:620491
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
ST1D1; Sultn; Sult-n
Summary
Predicted to enable aryl sulfotransferase activity. Predicted to be involved in sulfation. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Brain (RPKM 31.9), Uterus (RPKM 28.6) and 4 other tissues See more
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Genomic context

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Location:
14p21
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (20720430..20755495)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (20441135..20476341)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (22107418..22126011)

Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120096585 Neighboring gene sulfotransferase family 1E member 1 Neighboring gene sulfotransferase family 1B member 1 Neighboring gene UDP glucuronosyltransferase family 2 member A1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables aryl sulfotransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in catecholamine metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in sulfate assimilation IEA
Inferred from Electronic Annotation
more info
  
involved_in sulfation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
sulfotransferase 1 family member D1
Names
N-sulfotransferase
dopamine sulfotransferase Sult1d1
tyrosine-ester sulfotransferase
NP_068537.2
XP_038948296.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_021769.2 → NP_068537.2  sulfotransferase 1 family member D1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000014
    UniProtKB/Swiss-Prot
    G3V9R3, Q9Z1G0
    Related
    ENSRNOP00000066303.2, ENSRNOT00000072483.3
    Conserved Domains (1) summary
    pfam00685
    Location:38 → 288
    Sulfotransfer_1; Sulfotransferase domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086032.1 Reference GRCr8

    Range
    20720430..20755495
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039092368.2 → XP_038948296.1  sulfotransferase 1 family member D1 isoform X1

    UniProtKB/Swiss-Prot
    G3V9R3, Q9Z1G0
    Conserved Domains (1) summary
    pfam00685
    Location:38 → 288
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
G3V9R3.1 GenPept UniProtKB/Swiss-Prot:G3V9R3

Gene LinkOut

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