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si:dkey-11f4.7 si:dkey-11f4.7 [ Danio rerio (zebrafish) ]

Gene ID: 569687, updated on 27-Mar-2024

Summary

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Official Symbol
si:dkey-11f4.7provided by ZNC
Official Full Name
si:dkey-11f4.7provided by ZNC
Primary source
ZFIN:ZDB-GENE-070912-361
See related
AllianceGenome:ZFIN:ZDB-GENE-070912-361
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable mechanosensitive ion channel activity. Predicted to be located in membrane. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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Location:
chromosome: 9
Exon count:
52
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (359834..420577, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (360397..420866, complement)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene BPI fold containing family C, like Neighboring gene zgc:158320 Neighboring gene si:dkey-11f4.14 Neighboring gene basic leucine zipper and W2 domains 1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
piezo-type mechanosensitive ion channel component 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    359834..420577 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021478801.1 → XP_021334476.1  piezo-type mechanosensitive ion channel component 2 isoform X2

    UniProtKB/TrEMBL
    A0A8M9QFP6
    Conserved Domains (2) summary
    pfam12166
    Location:2185 → 2628
    Piezo_RRas_bdg; Piezo non-specific cation channel, R-Ras-binding domain
    pfam15917
    Location:1279 → 1475
    PIEZO; Piezo

  2. XM_009304390.3 → XP_009302665.1  piezo-type mechanosensitive ion channel component 2 isoform X3

    UniProtKB/TrEMBL
    A0A8M3BC71
    Conserved Domains (2) summary
    pfam12166
    Location:2186 → 2600
    Piezo_RRas_bdg; Piezo non-specific cation channel, R-Ras-binding domain
    pfam15917
    Location:1279 → 1478
    PIEZO; Piezo

  3. XM_021478800.1 → XP_021334475.1  piezo-type mechanosensitive ion channel component 2 isoform X1

    UniProtKB/TrEMBL
    A0A8M9QJW7
    Conserved Domains (2) summary
    pfam12166
    Location:2186 → 2629
    Piezo_RRas_bdg; Piezo non-specific cation channel, R-Ras-binding domain
    pfam15917
    Location:1279 → 1475
    PIEZO; Piezo
Nucleotide Protein Strain
Heading Accession and Version

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