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si:ch211-238e22.2 si:ch211-238e22.2 [ Danio rerio (zebrafish) ]

Gene ID: 560730, updated on 27-Mar-2024

Summary

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Official Symbol
si:ch211-238e22.2provided by ZNC
Official Full Name
si:ch211-238e22.2provided by ZNC
Primary source
ZFIN:ZDB-GENE-041210-346
See related
Ensembl:ENSDARG00000112450 AllianceGenome:ZFIN:ZDB-GENE-041210-346
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
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Genomic context

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See si:ch211-238e22.2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (57099307..57100326)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (55164339..55170229)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene si:dkey-40j3.3 Neighboring gene gastrula zinc finger protein XlCGF8.2DB-like Neighboring gene transfer RNA arginine (anticodon UCG) Neighboring gene si:ch211-238e22.4 Neighboring gene uncharacterized LOC103910786 Neighboring gene uncharacterized LOC103910785

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
uncharacterized protein LOC560730

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030146.1 → NP_001025317.1  uncharacterized protein LOC560730

    Status: PREDICTED

    Source sequence(s)
    BX890548
    UniProtKB/TrEMBL
    A0A8M1N795, Q5RGK6
    Related
    ENSDARP00000118935.2, ENSDART00000131654.3

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    57099307..57100326
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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