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omd osteomodulin [ Danio rerio (zebrafish) ]

Gene ID: 557913, updated on 27-Mar-2024

Summary

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Official Symbol
omdprovided by ZNC
Official Full Name
osteomodulinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-060503-756
See related
Ensembl:ENSDARG00000093600 AllianceGenome:ZFIN:ZDB-GENE-060503-756
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
sb:eu895; si:ch211-103f16.5
Summary
Predicted to act upstream of or within regulation of bone mineralization. Predicted to be located in collagen-containing extracellular matrix. Predicted to be active in extracellular space. Orthologous to human OMD (osteomodulin). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 22
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (10463870..10470789, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (10434194..10438257, complement)

Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene nucleolar protein 8 Neighboring gene centromere protein P Neighboring gene osteoglycin, paralog a Neighboring gene asporin (LRR class 1) Neighboring gene extracellular matrix protein 2, female organ and adipocyte specific

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
osteomodulin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007133.7 Reference GRCz11 Primary Assembly

    Range
    10463870..10470789 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017353401.2 → XP_017208890.1  osteomodulin

    UniProtKB/TrEMBL
    A0A8M6Z497, F6NL91
    Related
    ENSDARP00000120226.2, ENSDART00000143352.3
    Conserved Domains (4) summary
    smart00013
    Location:63 → 97
    LRRNT; Leucine rich repeat N-terminal domain
    cd00116
    Location:123 → 344
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:95 → 118
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:93 → 155
    LRR_8; Leucine rich repeat
Nucleotide Protein Strain
Heading Accession and Version

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